MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:20.3 nTPM
HPA Brain:50.5 nTPM
GTEx:20.3 nTPM
FANTOM5:3.0 Scaled Tags Per Million
Pig:88.4 nTPM
Mouse:181.6 nTPM
Allen mouse:9.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 50.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 20.9
1830 Male, age 51, unknown 29.4
2411 Female, age 72, unknown 28.3
1833 Male, age 53, unknown 26.7
2586 Male, age 75, left hemisphere 26.7
1827 Male, age 72, unknown 21.1
2219 Male, age 76, both hemispheres 20.2
2019 Male, age 18, unknown 18.2
1870 Female, age 42, unknown 15.8
2828 Female, age 72, unknown 11.9
2666 Male, age 74, left hemisphere 11.2
Dorsal raphe nucleus
nTPM: 18.7
2047 Male, age 72, unknown 24.3
1828 Male, age 53, unknown 20.8
2298 Female, age 72, unknown 18.3
2750 Male, age 76, both hemispheres 16.3
2016 Female, age 72, unknown 13.9
Inferior colliculus
nTPM: 38.1
2849 Male, age 72, unknown 55.3
1848 Female, age 42, unknown 54.8
1890 Male, age 53, unknown 23.8
2097 Female, age 72, unknown 18.3
Median raphe nucleus
nTPM: 8.0
2220 Male, age 76, midline 8.0
Periaquaductal grey, anterior
nTPM: 20.5
2502 Female, age 75, unknown 47.2
1947 Male, age 18, unknown 8.1
1795 Male, age 51, unknown 6.3
Periaquaductal grey, dorsal
nTPM: 16.8
2464 Female, age 72, unknown 25.9
1840 Male, age 53, unknown 17.7
2850 Male, age 76, both hemispheres 16.6
1831 Male, age 72, unknown 6.8
Periaquaductal grey, lateral
nTPM: 17.4
2053 Male, age 18, unknown 22.8
2140 Male, age 76, both hemispheres 17.9
2272 Male, age 74, both hemispheres 11.5
Pretectal area
nTPM: 19.1
2316 Male, age 76, right hemisphere 32.6
2825 Male, age 18, unknown 26.5
1944 Female, age 72, unknown 25.9
1816 Male, age 51, unknown 21.3
2407 Male, age 75, both hemispheres 20.9
2667 Female, age 75, unknown 17.1
1815 Male, age 53, unknown 14.7
2224 Female, age 72, unknown 14.1
2273 Male, age 74, both hemispheres 13.1
1817 Female, age 42, unknown 12.1
2007 Male, age 72, unknown 12.0
Red nucleus
nTPM: 50.5
1821 Female, age 72, unknown 98.8
2227 Male, age 72, unknown 66.4
2769 Male, age 72, unknown 66.2
2823 Male, age 76, right hemisphere 66.2
1954 Female, age 42, unknown 65.6
1865 Male, age 51, unknown 56.3
2503 Female, age 72, unknown 47.4
1904 Male, age 53, unknown 43.7
2588 Male, age 74, left hemisphere 34.8
2584 Male, age 75, left hemisphere 23.4
2725 Female, age 75, unknown 19.3
2785 Male, age 18, unknown 17.7
Substantia nigra
nTPM: 21.2
1941 Male, age 53, unknown 45.6
1889 Female, age 72, unknown 27.4
2699 Male, age 18, unknown 27.1
2590 Female, age 75, unknown 26.9
2665 Male, age 74, both hemispheres 20.5
2241 Male, age 72, unknown 16.2
2409 Female, age 72, unknown 12.7
2583 Male, age 75, right hemisphere 12.6
1851 Male, age 51, unknown 12.0
1916 Female, age 42, unknown 10.6
Superior colliculus
nTPM: 27.6
1895 Male, age 76, right hemisphere 68.0
2261 Male, age 18, unknown 39.6
1839 Male, age 51, unknown 34.9
2087 Female, age 72, unknown 28.4
2664 Male, age 75, both hemispheres 22.8
2587 Male, age 74, left hemisphere 20.5
1995 Male, age 72, unknown 17.9
1913 Female, age 42, unknown 17.3
1796 Male, age 53, unknown 14.4
2668 Female, age 75, unknown 12.3
Ventral tegmental area
nTPM: 13.6
2410 Female, age 72, unknown 28.9
1942 Male, age 51, unknown 12.9
2223 Female, age 72, unknown 11.2
1915 Female, age 42, unknown 10.0
2218 Male, age 76, both hemispheres 9.8
2021 Male, age 53, unknown 8.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 20.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 20.3
Samples: 183

Max nTPM: 338.8
Min nTPM: 0.4
Std nTPM: 41.5
Median nTPM: 9.6
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 338.8
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 279.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 224.7
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 177.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 157.8
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 153.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 101.8
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 63.8
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 55.9
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 51.6
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 50.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 3.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 3.0
FF:10158-103A5 76 years, female 3.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 88.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 20.9
Samples: 4

Max nTPM: 30.0
Min nTPM: 13.9
Sample A Female 30.0
Sample B Female 16.1
Sample C Male 13.9
Sample D Male 23.4
Midbrain
nTPM: 59.8
Samples: 4

Max nTPM: 111.8
Min nTPM: 17.7
Sample A Female 31.1
Sample B Female 17.7
Sample C Male 111.8
Sample D Male 78.7
Periaqueductal gray
nTPM: 16.0
Samples: 3

Max nTPM: 17.9
Min nTPM: 14.4
Sample B Female 14.4
Sample C Male 17.9
Sample D Male 15.7
Superior colliculi
nTPM: 88.4
Samples: 4

Max nTPM: 142.6
Min nTPM: 41.8
Sample A Female 41.8
Sample B Female 68.3
Sample C Male 142.6
Sample D Male 100.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 181.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 181.6
Samples: 4

Max nTPM: 186.0
Min nTPM: 174.4
Sample A Male 182.1
Sample B Male 186.0
Sample C Female 184.0
Sample D Female 174.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 9.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.3
75084520 Antisense, RP_060412_04_C10, Mouse strain C57BL/6J (56 days, male) 11.7
69782873 Antisense, RP_050505_03_H09, Mouse strain C57BL/6J (56 days, male) 6.8

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