BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:239.8 nTPM
HPA Brain:159.7 nTPM
GTEx:239.8 nTPM
FANTOM5:154.2 Scaled Tags Per Million
Macaque:212.4 nTPM
Mouse:232.8 nTPM
Rat:186.1 nTPM
Pig:268.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 159.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 128.2
2586 Male, age 75, left hemisphere 204.5
2666 Male, age 74, left hemisphere 149.0
2019 Male, age 18, unknown 147.3
2828 Female, age 72, unknown 145.3
1827 Male, age 72, unknown 125.6
1870 Female, age 42, unknown 119.0
2219 Male, age 76, both hemispheres 107.2
1833 Male, age 53, unknown 106.5
1830 Male, age 51, unknown 95.5
2411 Female, age 72, unknown 82.4
Dorsal raphe nucleus
nTPM: 133.4
2047 Male, age 72, unknown 148.3
1828 Male, age 53, unknown 148.1
2298 Female, age 72, unknown 140.2
2750 Male, age 76, both hemispheres 123.0
2016 Female, age 72, unknown 107.3
Inferior colliculus
nTPM: 136.9
1890 Male, age 53, unknown 158.3
2097 Female, age 72, unknown 139.8
2849 Male, age 72, unknown 126.5
1848 Female, age 42, unknown 123.0
Median raphe nucleus
nTPM: 153.1
2220 Male, age 76, midline 153.1
Periaquaductal grey, anterior
nTPM: 141.3
1795 Male, age 51, unknown 159.0
1947 Male, age 18, unknown 143.1
2502 Female, age 75, unknown 121.7
Periaquaductal grey, dorsal
nTPM: 107.7
2850 Male, age 76, both hemispheres 133.8
1831 Male, age 72, unknown 102.7
1840 Male, age 53, unknown 98.2
2464 Female, age 72, unknown 96.2
Periaquaductal grey, lateral
nTPM: 112.7
2272 Male, age 74, both hemispheres 128.8
2053 Male, age 18, unknown 106.1
2140 Male, age 76, both hemispheres 103.3
Pretectal area
nTPM: 159.7
1816 Male, age 51, unknown 220.5
1944 Female, age 72, unknown 220.2
2007 Male, age 72, unknown 215.3
1817 Female, age 42, unknown 207.7
2667 Female, age 75, unknown 178.6
1815 Male, age 53, unknown 151.1
2224 Female, age 72, unknown 142.1
2825 Male, age 18, unknown 118.3
2273 Male, age 74, both hemispheres 106.6
2316 Male, age 76, right hemisphere 104.8
2407 Male, age 75, both hemispheres 91.1
Red nucleus
nTPM: 140.2
2785 Male, age 18, unknown 168.5
2503 Female, age 72, unknown 161.3
2725 Female, age 75, unknown 157.1
2769 Male, age 72, unknown 145.6
2823 Male, age 76, right hemisphere 139.3
2588 Male, age 74, left hemisphere 138.4
1821 Female, age 72, unknown 135.1
2227 Male, age 72, unknown 132.4
1954 Female, age 42, unknown 131.9
1865 Male, age 51, unknown 130.8
2584 Male, age 75, left hemisphere 124.8
1904 Male, age 53, unknown 117.3
Substantia nigra
nTPM: 140.8
2665 Male, age 74, both hemispheres 180.2
1916 Female, age 42, unknown 178.2
1889 Female, age 72, unknown 175.3
2583 Male, age 75, right hemisphere 140.5
1851 Male, age 51, unknown 139.1
1941 Male, age 53, unknown 131.7
2699 Male, age 18, unknown 117.3
2590 Female, age 75, unknown 117.2
2409 Female, age 72, unknown 116.0
2241 Male, age 72, unknown 112.7
Superior colliculus
nTPM: 127.7
2087 Female, age 72, unknown 159.1
1796 Male, age 53, unknown 157.3
2261 Male, age 18, unknown 138.8
2664 Male, age 75, both hemispheres 137.0
2668 Female, age 75, unknown 130.1
2587 Male, age 74, left hemisphere 121.3
1913 Female, age 42, unknown 113.0
1995 Male, age 72, unknown 109.2
1839 Male, age 51, unknown 107.1
1895 Male, age 76, right hemisphere 103.8
Ventral tegmental area
nTPM: 125.4
2218 Male, age 76, both hemispheres 143.5
1915 Female, age 42, unknown 136.6
1942 Male, age 51, unknown 123.6
2021 Male, age 53, unknown 123.0
2223 Female, age 72, unknown 117.9
2410 Female, age 72, unknown 107.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 239.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 239.8
Samples: 183

Max nTPM: 582.6
Min nTPM: 60.8
Std nTPM: 84.6
Median nTPM: 241.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 582.6
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 530.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 457.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 452.8
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 431.3
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 419.8
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 412.0
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 392.9
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 381.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 377.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 356.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 154.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 154.2
FF:10158-103A5 76 years, female 154.2

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 212.4
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 108.4
Samples: 1

Max nTPM: 108.4
Min nTPM: 108.4
Sample A 108.4
Midbrain
nTPM: 129.9
Samples: 1

Max nTPM: 129.9
Min nTPM: 129.9
Sample A 129.9
Superior colliculi
nTPM: 212.4
Samples: 1

Max nTPM: 212.4
Min nTPM: 212.4
Sample A 212.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 268.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 199.1
Samples: 3

Max nTPM: 271.3
Min nTPM: 136.1
Sample A Female 271.3
Sample B Female 136.1
Sample C Male 190.0
Midbrain
nTPM: 227.7
Samples: 3

Max nTPM: 272.0
Min nTPM: 173.5
Sample B Female 173.5
Sample C Male 272.0
Sample D Male 237.7
Periaqueductal gray
nTPM: 154.2
Samples: 3

Max nTPM: 178.7
Min nTPM: 129.3
Sample B Female 154.7
Sample C Male 178.7
Sample D Male 129.3
Superior colliculi
nTPM: 268.8
Samples: 4

Max nTPM: 341.3
Min nTPM: 222.0
Sample A Female 341.3
Sample B Female 223.8
Sample C Male 288.2
Sample D Male 222.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 232.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 232.8
Samples: 4

Max nTPM: 267.7
Min nTPM: 212.1
Sample A 230.2
Sample B 267.7
Sample C 221.1
Sample D 212.1

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 186.1
Rat sample Sample description nTPM
Midbrain
nTPM: 186.1
Samples: 4

Max nTPM: 201.2
Min nTPM: 167.3
Sample A 194.0
Sample A 201.2
Sample A 181.9
Sample A 167.3

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