MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:98.3 nTPM
HPA Brain:32.4 nTPM
GTEx:98.3 nTPM
FANTOM5:67.3 Scaled Tags Per Million
Pig:6.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 32.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 28.0
2666 Male, age 74, left hemisphere 43.3
1870 Female, age 42, unknown 33.0
2411 Female, age 72, unknown 30.5
2586 Male, age 75, left hemisphere 27.4
1827 Male, age 72, unknown 26.7
2019 Male, age 18, unknown 25.9
1830 Male, age 51, unknown 24.8
2828 Female, age 72, unknown 23.3
2219 Male, age 76, both hemispheres 22.6
1833 Male, age 53, unknown 22.5
Dorsal raphe nucleus
nTPM: 26.0
2750 Male, age 76, both hemispheres 32.1
1828 Male, age 53, unknown 28.1
2016 Female, age 72, unknown 26.6
2047 Male, age 72, unknown 21.9
2298 Female, age 72, unknown 21.2
Inferior colliculus
nTPM: 22.8
1890 Male, age 53, unknown 26.4
2849 Male, age 72, unknown 24.1
2097 Female, age 72, unknown 20.7
1848 Female, age 42, unknown 20.1
Median raphe nucleus
nTPM: 28.3
2220 Male, age 76, midline 28.3
Periaquaductal grey, anterior
nTPM: 21.5
2502 Female, age 75, unknown 23.2
1947 Male, age 18, unknown 21.2
1795 Male, age 51, unknown 20.0
Periaquaductal grey, dorsal
nTPM: 24.0
2850 Male, age 76, both hemispheres 26.8
1840 Male, age 53, unknown 24.7
1831 Male, age 72, unknown 24.6
2464 Female, age 72, unknown 19.8
Periaquaductal grey, lateral
nTPM: 19.5
2140 Male, age 76, both hemispheres 24.1
2053 Male, age 18, unknown 21.6
2272 Male, age 74, both hemispheres 12.9
Pretectal area
nTPM: 23.2
1815 Male, age 53, unknown 30.0
1816 Male, age 51, unknown 27.3
1817 Female, age 42, unknown 26.3
2007 Male, age 72, unknown 26.3
1944 Female, age 72, unknown 24.3
2825 Male, age 18, unknown 23.9
2316 Male, age 76, right hemisphere 23.1
2667 Female, age 75, unknown 22.2
2224 Female, age 72, unknown 20.7
2407 Male, age 75, both hemispheres 15.7
2273 Male, age 74, both hemispheres 15.2
Red nucleus
nTPM: 32.4
2503 Female, age 72, unknown 40.6
1954 Female, age 42, unknown 36.0
2588 Male, age 74, left hemisphere 35.5
2725 Female, age 75, unknown 35.1
2823 Male, age 76, right hemisphere 34.1
1904 Male, age 53, unknown 33.6
1865 Male, age 51, unknown 33.4
2769 Male, age 72, unknown 30.5
2227 Male, age 72, unknown 30.1
1821 Female, age 72, unknown 29.0
2584 Male, age 75, left hemisphere 27.2
2785 Male, age 18, unknown 23.6
Substantia nigra
nTPM: 32.3
1916 Female, age 42, unknown 43.3
2699 Male, age 18, unknown 39.6
2241 Male, age 72, unknown 37.9
2665 Male, age 74, both hemispheres 36.3
1851 Male, age 51, unknown 35.6
2409 Female, age 72, unknown 33.5
1889 Female, age 72, unknown 25.6
2583 Male, age 75, right hemisphere 24.9
1941 Male, age 53, unknown 23.4
2590 Female, age 75, unknown 23.3
Superior colliculus
nTPM: 24.2
2668 Female, age 75, unknown 28.3
2587 Male, age 74, left hemisphere 26.7
1796 Male, age 53, unknown 26.1
2087 Female, age 72, unknown 24.2
1895 Male, age 76, right hemisphere 23.9
1913 Female, age 42, unknown 23.7
2261 Male, age 18, unknown 23.4
1839 Male, age 51, unknown 22.1
2664 Male, age 75, both hemispheres 22.0
1995 Male, age 72, unknown 21.3
Ventral tegmental area
nTPM: 29.2
1915 Female, age 42, unknown 34.6
2223 Female, age 72, unknown 33.3
2410 Female, age 72, unknown 29.4
2218 Male, age 76, both hemispheres 27.4
1942 Male, age 51, unknown 26.6
2021 Male, age 53, unknown 24.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 98.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 98.3
Samples: 183

Max nTPM: 240.0
Min nTPM: 44.7
Std nTPM: 27.0
Median nTPM: 94.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 240.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 185.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 181.4
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 177.1
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 172.4
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 171.6
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 161.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 158.0
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 147.1
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 142.6
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 140.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 67.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 67.3
FF:10158-103A5 76 years, female 67.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 6.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 6.5
Samples: 4

Max nTPM: 7.5
Min nTPM: 5.6
Sample A Female 6.0
Sample B Female 5.6
Sample C Male 6.8
Sample D Male 7.5
Midbrain
nTPM: 6.1
Samples: 4

Max nTPM: 8.3
Min nTPM: 4.4
Sample A Female 8.3
Sample B Female 6.4
Sample C Male 4.4
Sample D Male 5.1
Periaqueductal gray
nTPM: 6.0
Samples: 3

Max nTPM: 6.1
Min nTPM: 5.9
Sample B Female 5.9
Sample C Male 6.1
Sample D Male 6.0
Superior colliculi
nTPM: 5.1
Samples: 4

Max nTPM: 5.8
Min nTPM: 4.6
Sample A Female 4.6
Sample B Female 5.2
Sample C Male 4.7
Sample D Male 5.8

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