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BETA
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  • EEF1G
EVOLUTIONARY RETINA Show tissue menu
BRAIN74 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS MIDDLE TEMPORAL GYRUS MOTOR AND PREFRONTAL CORTEX
MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTAL AREA SEPTUM
SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Eye
Evolutionary methods
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:386.0 nTPM
GTEx:386.0 nTPM
FANTOM5:17.4 Scaled Tags Per Million
Macaque:149.6 nTPM
Mouse:210.3 nTPM
Rat:61.6 nTPM
Pig:128.1 nTPM
EYE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

386.0
GTEx sample id Sample description nTPM
Retina
Average nTPM: 386.0
Samples: 105

Max nTPM: 580.8
Min nTPM: 157.3
Std nTPM: 90.5
Median nTPM:
218_1 71 years, female 580.8
379_1 60 years, male 573.5
237_1 82 years, male 553.2
319_1 81 years, male 537.0
452_1 88 years, female 518.6
321_1 62 years, female 511.7
35_1 74 years, female 506.2
243_1 75 years, male 497.1
189_1 76 years, male 494.5
172_1 72 years, female 493.2
351_1 91 years, male 487.8
447_1 81 years, male 487.7
376_1 75 years, female 487.3
322_1 76 years, male 487.2
355_1 70 years, female 480.6
386_1 76 years, male 477.0
6_1 73 years, female 475.8
320_1 89 years, female 475.5
353_1 82 years, female 473.7
246_1 77 years, male 472.7
377_1 82 years, female 466.6
17_1 71 years, male 465.2
173_1 67 years, male 462.5
384_1 83 years, male 462.0
354_1 81 years, female 458.2
347_1 72 years, male 458.1
137_1 83 years, male 449.6
295_1 61 years, female 449.3
352_1 62 years, male 445.2
350_1 84 years, female 443.2
394_1 75 years, female 438.6
120_1 70 years, female 438.0
317_1 60 years, male 438.0
145_1 84 years, male 437.5
153_1 70 years, female 436.9
99_1 64 years, male 435.9
406_1 79 years, male 434.3
163_1 78 years, male 433.6
41_1 94 years, female 433.1
389_1 86 years, female 432.9
177_1 74 years, male 430.9
4_1 88 years, female 425.3
115_1 83 years, male 420.5
404_1 82 years, female 418.9
293_1 68 years, female 416.2
318_1 68 years, male 413.4
316_1 62 years, male 410.7
286_1 68 years, female 409.0
349_1 83 years, male 406.8
506_1 65 years, male 405.1
375_1 74 years, female 402.4
425_1 59 years, female 401.4
229_1 69 years, female 395.3
503_1 68 years, male 394.1
396_1 62 years, male 390.9
18_1 88 years, male 386.8
335_1 73 years, female 385.2
126_1 63 years, male 383.6
526_1 61 years, male 382.8
405_1 91 years, male 381.4
264_1 73 years, female 375.6
291_1 76 years, male 374.6
266_1 85 years, male 371.9
348_1 84 years, male 364.3
2_1 77 years, female 361.7
480_1 63 years, male 361.3
117_1 61 years, male 359.8
251_1 78 years, male 355.2
292_1 71 years, male 352.5
356_1 87 years, female 344.7
311_1 78 years, male 338.0
265_1 87 years, male 337.2
139_1 64 years, female 336.8
109_1 81 years, female 331.7
315_1 62 years, female 329.4
288_1 66 years, female 328.7
324_1 76 years, male 327.4
307_1 66 years, female 323.8
217_1 76 years, male 323.2
254_1 77 years, female 321.7
468_1 89 years, male 321.5
518_1 75 years, female 318.7
119_1 70 years, female 316.1
314_1 67 years, male 311.6
42_1 85 years, male 308.8
9_1 66 years, female 307.2
517_1 88 years, male 306.9
142_1 61 years, female 296.9
308_1 70 years, female 294.9
499_1 55 years, female 290.3
495_1 57 years, female 284.4
162_1 79 years, female 279.2
415_1 77 years, female 277.3
81_1 67 years, male 263.1
313_1 79 years, female 262.1
43_1 64 years, female 251.9
414_1 84 years, female 250.7
32_1 67 years, male 246.2
89_1 63 years, male 238.2
501_1 88 years, male 219.4
466_1 57 years, female 210.8
413_1 59 years, female 187.4
149_1 88 years, male 182.4
491_1 89 years, female 173.8
490_1 67 years, female 157.3
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

17.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 17.4
FF:10030-101E3 24-65 years, mixed 17.4

RETINA - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

149.6
Macaque sample Sample description nTPM
Retina
nTPM: 149.7
Samples: 2

Max nTPM: 195.8
Min nTPM: 103.5
Sample A 103.5
Sample B 195.8

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

128.1
Pig sample Sample description nTPM
Retina
nTPM: 128.1
Samples: 4

Max nTPM: 154.0
Min nTPM: 105.7
Sample A Female 123.9
Sample B Female 128.8
Sample C Male 154.0
Sample D Male 105.7

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

210.3
Mouse sample Sample description nTPM
Retina
nTPM: 210.3
Samples: 3

Max nTPM: 242.6
Min nTPM: 175.9
Sample D 242.6
Sample B 175.9
Sample C 212.3

RETINA - Rat RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

61.6
Rat sample Sample description nTPM
Retina
nTPM: 61.6
Samples: 4

Max nTPM: 63.4
Min nTPM: 59.2
Sample B 59.2
Sample A 61.3
Sample A 63.4
Sample A 62.4

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