On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Urothelial cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.
Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)
Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts
Antibody HPA047750
Antibody HPA066795
Antibody CAB003787
Urothelial cells
Low
Not detected
Not detected
URINARY BLADDER - PROTEINTALKS DB MS
Median intensity
7650
Sample
Intensity
Urinary bladder_01
7650
URINARY BLADDER - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1.4
Male, age 74
Urinary bladder sample 264 nTPM: 0.9
Cell types%
Urothelial cells:
5
Smooth muscle cells:
60
Fibroblasts:
20
Endothelial cells:
10
Other cell types:
5
Male, age 80
Urinary bladder sample 265 nTPM: 0.7
Cell types%
Urothelial cells:
10
Smooth muscle cells:
45
Fibroblasts:
15
Endothelial cells:
10
Other cell types:
20
Female, age 79
Urinary bladder sample 1597 nTPM: 3.9
Male, age 52
Urinary bladder sample 1598 nTPM: 0.3
URINARY BLADDER - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
4.6
GTEx sample id
Sample description
nTPM
Bladder Average nTPM: 4.6
Samples: 77
Max nTPM: 79.3
Min nTPM: 0.0
Std nTPM: 13.2
Median nTPM: 0.5
GTEX-SUCS-1226-SM-GPI9A
70-79 years, male
79.3
GTEX-T8EM-1726-SM-GPRWO
40-49 years, male
66.7
GTEX-QDVN-1426-SM-GPRWL
50-59 years, male
48.8
GTEX-S4Q7-0926-SM-4AD5D
20-29 years, male
24.9
GTEX-P4PQ-1926-SM-GRR14
60-69 years, male
23.7
GTEX-NPJ8-1126-SM-GNTAI
40-49 years, male
19.5
GTEX-S32W-1126-SM-4AD5V
50-59 years, female
14.4
GTEX-QEG5-2326-SM-GRR2Z
20-29 years, male
7.5
GTEX-S4UY-0926-SM-4AD6O
40-49 years, female
6.2
GTEX-S3XE-1226-SM-4AD4L
50-59 years, male
5.3
GTEX-R45C-2426-SM-HL11G
60-69 years, female
4.5
GTEX-QDT8-2826-SM-GOQYY
30-39 years, female
4.1
GTEX-OXRK-1926-SM-GRR1N
50-59 years, female
3.8
GTEX-U4B1-1226-SM-4DXT7
40-49 years, male
3.7
GTEX-TMMY-1526-SM-4DXST
40-49 years, female
3.2
GTEX-QLQ7-1226-SM-GOQYE
60-69 years, male
2.6
GTEX-RUSQ-1326-SM-GQ1EA
50-59 years, male
2.6
GTEX-Q2AI-1026-SM-GRR3I
40-49 years, male
2.3
GTEX-QCQG-0826-SM-GPI8H
50-59 years, female
2.0
GTEX-SE5C-1026-SM-4BRUG
40-49 years, female
2.0
GTEX-U3ZM-0826-SM-4DXU6
40-49 years, male
1.9
GTEX-O5YT-1926-SM-H6Q82
20-29 years, male
1.7
GTEX-P44H-2226-SM-E9U4P
40-49 years, male
1.6
GTEX-RWS6-1426-SM-GPRWQ
60-69 years, female
1.5
GTEX-OIZF-1926-SM-7PBZS
60-69 years, male
1.4
GTEX-S7SF-1126-SM-GQ1CH
20-29 years, female
1.4
GTEX-Q2AH-1326-SM-GPRWF
40-49 years, male
1.3
GTEX-U3ZN-1226-SM-4DXUD
30-39 years, female
1.3
GTEX-N7MT-1826-SM-GQ1C9
60-69 years, female
1.2
GTEX-P4QT-1926-SM-HAUYQ
50-59 years, female
1.0
GTEX-QMRM-1326-SM-HAUYS
50-59 years, male
1.0
GTEX-RM2N-1026-SM-GOQY8
50-59 years, male
0.8
GTEX-QDVJ-1526-SM-GPI84
50-59 years, male
0.7
GTEX-QXCU-2226-SM-GPI87
50-59 years, male
0.7
GTEX-RN64-2426-SM-EZ6L2
50-59 years, male
0.7
GTEX-OHPK-1926-SM-H7OF2
50-59 years, female
0.6
GTEX-OHPL-1926-SM-HAV18
60-69 years, female
0.6
GTEX-OOBK-1926-SM-HAUZL
40-49 years, male
0.6
GTEX-OIZI-1926-SM-H7OGY
40-49 years, male
0.5
GTEX-PLZ5-1326-SM-GQ1C2
50-59 years, male
0.5
GTEX-R53T-1426-SM-H7OG3
50-59 years, female
0.5
GTEX-R55C-1226-SM-GOQY7
40-49 years, male
0.5
GTEX-S33H-1926-SM-EYYVH
30-39 years, male
0.5
GTEX-SNOS-0526-SM-4DM54
40-49 years, male
0.5
GTEX-T6MN-2226-SM-EVYAM
50-59 years, male
0.5
GTEX-OOBJ-1926-SM-GRR1P
60-69 years, male
0.4
GTEX-P4PP-1926-SM-HAUZM
30-39 years, female
0.4
GTEX-QEL4-1826-SM-EZ6KU
50-59 years, male
0.4
GTEX-QV31-0926-SM-GQ1C6
30-39 years, male
0.4
GTEX-RWSA-2126-SM-H7OG7
40-49 years, male
0.4
GTEX-T5JW-1026-SM-EZ6LR
20-29 years, female
0.4
GTEX-P4QS-1926-SM-GQ1BY
60-69 years, male
0.3
GTEX-P78B-2126-SM-GQ1C3
40-49 years, female
0.3
GTEX-PWCY-1126-SM-H7OGX
20-29 years, female
0.3
GTEX-PWN1-1926-SM-HAUZN
40-49 years, female
0.3
GTEX-R55G-1326-SM-HAUYU
40-49 years, female
0.3
GTEX-SNMC-0826-SM-4DM66
20-29 years, male
0.3
GTEX-T2IS-2526-SM-GRR23
20-29 years, female
0.3
GTEX-T5JC-1126-SM-GPIA1
20-29 years, male
0.3
GTEX-U3ZH-0826-SM-H6Q7I
30-39 years, male
0.3
GTEX-N7MS-2126-SM-GRR2X
60-69 years, male
0.2
GTEX-PLZ6-1026-SM-GQ1C8
30-39 years, male
0.2
GTEX-QLQW-0826-SM-H7OG2
30-39 years, male
0.2
GTEX-REY6-2026-SM-GPRYL
60-69 years, male
0.2
GTEX-RNOR-2126-SM-EXURR
50-59 years, female
0.2
GTEX-T6MO-0926-SM-GPRWN
40-49 years, female
0.2
GTEX-TKQ2-0526-SM-GRR15
50-59 years, male
0.2
GTEX-OHPM-1926-SM-H7OG1
50-59 years, male
0.1
GTEX-OIZH-1926-SM-GPRXO
50-59 years, male
0.1
GTEX-POMQ-0926-SM-H6Q6H
20-29 years, female
0.1
GTEX-PX3G-1926-SM-GQ1ED
20-29 years, female
0.1
GTEX-Q734-1226-SM-GRR21
40-49 years, female
0.1
GTEX-QEG4-2126-SM-GQ1CE
30-39 years, male
0.1
GTEX-QV44-1426-SM-GPI8D
50-59 years, male
0.1
GTEX-S4P3-0826-SM-H7OF3
50-59 years, female
0.1
GTEX-S95S-0626-SM-EZ6L8
60-69 years, male
0.1
GTEX-PW2O-1026-SM-GPRWA
20-29 years, male
0.0
Show allShow less
URINARY BLADDER - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
