A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2.8
nTPM
Monaco:
14.9
nTPM
Schmiedel:
30.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.8
HPA sample
nTPM
Classical monocyte nTPM: 2.0
Samples: 6
Max nTPM: 2.8
Min nTPM: 1.3
P10809_1003
1.3
P10809_1020
2.0
P10809_1039
2.8
P10809_1058
1.7
P10809_1080
1.9
P10809_1107
2.3
Intermediate monocyte nTPM: 2.8
Samples: 6
Max nTPM: 4.7
Min nTPM: 1.9
P10809_1004
1.9
P10809_1023
1.9
P10809_1042
3.6
P10809_1061
4.7
P10809_1081
2.5
P10809_1108
2.2
Non-classical monocyte nTPM: 2.8
Samples: 5
Max nTPM: 4.6
Min nTPM: 1.9
P10809_1005
3.0
P10809_1053
2.2
P10809_1072
4.6
P10809_1082
2.4
P10809_1109
1.9
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
14.9
Monaco sample
nTPM
Classical monocyte nTPM: 7.9
Samples: 4
Max nTPM: 10.8
Min nTPM: 6.6
RHH5313_R3680
6.6
RHH5221_R3593
10.8
RHH5250_R3622
7.2
RHH5279_R3651
7.2
Intermediate monocyte nTPM: 14.9
Samples: 4
Max nTPM: 19.5
Min nTPM: 11.6
RHH5314_R3681
11.7
RHH5222_R3594
19.5
RHH5251_R3623
16.6
RHH5280_R3652
11.6
Non-classical monocyte nTPM: 10.7
Samples: 4
Max nTPM: 17.6
Min nTPM: 6.3
RHH5315_R3682
17.6
RHH5223_R3595
6.3
RHH5252_R3624
12.3
RHH5281_R3653
6.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
30.2
Schmiedel sample id
TPM
Classical monocyte TPM: 25.5
Samples: 91
Max TPM: 34.8
Min TPM: 16.9
MONOCYTES_1
34.8
MONOCYTES_2
34.7
MONOCYTES_3
34.7
MONOCYTES_4
33.3
MONOCYTES_5
32.2
MONOCYTES_6
32.0
MONOCYTES_7
31.7
MONOCYTES_8
31.6
MONOCYTES_9
30.1
MONOCYTES_10
29.7
MONOCYTES_11
29.7
MONOCYTES_12
29.7
MONOCYTES_13
29.6
MONOCYTES_14
29.4
MONOCYTES_15
29.4
MONOCYTES_16
29.3
MONOCYTES_17
29.1
MONOCYTES_18
29.0
MONOCYTES_19
29.0
MONOCYTES_20
29.0
MONOCYTES_21
28.8
MONOCYTES_22
28.7
MONOCYTES_23
28.4
MONOCYTES_24
28.3
MONOCYTES_25
28.0
MONOCYTES_26
27.9
MONOCYTES_27
27.9
MONOCYTES_28
27.8
MONOCYTES_29
27.8
MONOCYTES_30
27.8
MONOCYTES_31
27.7
MONOCYTES_32
27.6
MONOCYTES_33
27.6
MONOCYTES_34
27.4
MONOCYTES_35
27.2
MONOCYTES_36
27.2
MONOCYTES_37
27.2
MONOCYTES_38
27.1
MONOCYTES_39
27.0
MONOCYTES_40
26.7
MONOCYTES_41
26.6
MONOCYTES_42
26.5
MONOCYTES_43
26.2
MONOCYTES_44
26.1
MONOCYTES_45
26.0
MONOCYTES_46
26.0
MONOCYTES_47
25.9
MONOCYTES_48
25.8
MONOCYTES_49
25.4
MONOCYTES_50
25.2
MONOCYTES_51
25.2
MONOCYTES_52
25.1
MONOCYTES_53
24.9
MONOCYTES_54
24.9
MONOCYTES_55
24.7
MONOCYTES_56
24.7
MONOCYTES_57
24.5
MONOCYTES_58
24.2
MONOCYTES_59
24.1
MONOCYTES_60
23.8
MONOCYTES_61
23.5
MONOCYTES_62
23.3
MONOCYTES_63
23.3
MONOCYTES_64
23.2
MONOCYTES_65
23.1
MONOCYTES_66
23.0
MONOCYTES_67
22.9
MONOCYTES_68
22.8
MONOCYTES_69
22.8
MONOCYTES_70
22.5
MONOCYTES_71
22.5
MONOCYTES_72
21.9
MONOCYTES_73
21.4
MONOCYTES_74
20.8
MONOCYTES_75
20.6
MONOCYTES_76
20.5
MONOCYTES_77
20.3
MONOCYTES_78
20.1
MONOCYTES_79
20.1
MONOCYTES_80
20.0
MONOCYTES_81
19.8
MONOCYTES_82
19.7
MONOCYTES_83
19.1
MONOCYTES_84
19.0
MONOCYTES_85
18.9
MONOCYTES_86
18.8
MONOCYTES_87
18.4
MONOCYTES_88
17.3
MONOCYTES_89
17.0
MONOCYTES_90
17.0
MONOCYTES_91
16.9
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Non-classical monocyte TPM: 30.2
Samples: 90
Max TPM: 42.8
Min TPM: 17.1
M2_1
42.8
M2_2
41.1
M2_3
41.1
M2_4
39.0
M2_5
37.9
M2_6
37.9
M2_7
37.6
M2_8
37.5
M2_9
37.3
M2_10
36.6
M2_11
36.6
M2_12
36.2
M2_13
36.1
M2_14
35.9
M2_15
35.7
M2_16
34.9
M2_17
34.9
M2_18
34.8
M2_19
34.8
M2_20
34.7
M2_21
34.6
M2_22
34.4
M2_23
34.4
M2_24
34.2
M2_25
34.1
M2_26
34.1
M2_27
34.0
M2_28
33.9
M2_29
33.8
M2_30
33.5
M2_31
33.2
M2_32
33.1
M2_33
33.0
M2_34
32.9
M2_35
32.2
M2_36
31.9
M2_37
31.9
M2_38
31.9
M2_39
31.7
M2_40
31.7
M2_41
31.7
M2_42
31.6
M2_43
31.5
M2_44
30.9
M2_45
30.8
M2_46
30.8
M2_47
30.1
M2_48
29.9
M2_49
29.7
M2_50
29.7
M2_51
29.4
M2_52
28.7
M2_53
28.5
M2_54
28.5
M2_55
28.1
M2_56
28.0
M2_57
27.9
M2_58
27.9
M2_59
27.8
M2_60
27.8
M2_61
27.6
M2_62
27.5
M2_63
27.5
M2_64
27.2
M2_65
27.0
M2_66
26.6
M2_67
26.3
M2_68
26.1
M2_69
26.0
M2_70
25.9
M2_71
25.8
M2_72
25.7
M2_73
24.7
M2_74
24.4
M2_75
24.4
M2_76
24.3
M2_77
24.3
M2_78
23.9
M2_79
23.1
M2_80
23.0
M2_81
22.9
M2_82
22.8
M2_83
22.4
M2_84
22.3
M2_85
22.0
M2_86
21.9
M2_87
21.1
M2_88
20.7
M2_89
18.2
M2_90
17.1
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