MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12.3 nTPM
HPA Brain:95.0 nTPM
GTEx:12.3 nTPM
FANTOM5:84.3 Scaled Tags Per Million
Pig:48.9 nTPM
Mouse:21.9 nTPM
Allen mouse:0.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 95.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 72.1
1830 Male, age 51, unknown 84.4
2586 Male, age 75, left hemisphere 83.2
1833 Male, age 53, unknown 80.5
2411 Female, age 72, unknown 79.8
1870 Female, age 42, unknown 77.7
2019 Male, age 18, unknown 75.7
2666 Male, age 74, left hemisphere 68.8
2828 Female, age 72, unknown 66.4
1827 Male, age 72, unknown 55.7
2219 Male, age 76, both hemispheres 48.8
Dorsal raphe nucleus
nTPM: 54.7
2750 Male, age 76, both hemispheres 72.6
2016 Female, age 72, unknown 62.2
1828 Male, age 53, unknown 55.3
2047 Male, age 72, unknown 47.2
2298 Female, age 72, unknown 36.1
Inferior colliculus
nTPM: 53.7
2849 Male, age 72, unknown 59.2
1890 Male, age 53, unknown 59.0
1848 Female, age 42, unknown 57.3
2097 Female, age 72, unknown 39.5
Median raphe nucleus
nTPM: 52.6
2220 Male, age 76, midline 52.6
Periaquaductal grey, anterior
nTPM: 49.0
2502 Female, age 75, unknown 55.9
1947 Male, age 18, unknown 51.4
1795 Male, age 51, unknown 39.8
Periaquaductal grey, dorsal
nTPM: 45.1
2464 Female, age 72, unknown 53.7
2850 Male, age 76, both hemispheres 47.7
1831 Male, age 72, unknown 44.0
1840 Male, age 53, unknown 35.2
Periaquaductal grey, lateral
nTPM: 47.2
2053 Male, age 18, unknown 51.5
2140 Male, age 76, both hemispheres 50.9
2272 Male, age 74, both hemispheres 39.1
Pretectal area
nTPM: 49.0
1815 Male, age 53, unknown 62.8
1817 Female, age 42, unknown 57.5
2316 Male, age 76, right hemisphere 57.1
2407 Male, age 75, both hemispheres 56.0
2007 Male, age 72, unknown 54.7
2825 Male, age 18, unknown 53.0
2667 Female, age 75, unknown 49.7
2224 Female, age 72, unknown 38.6
1944 Female, age 72, unknown 38.2
1816 Male, age 51, unknown 35.7
2273 Male, age 74, both hemispheres 35.3
Red nucleus
nTPM: 95.0
1865 Male, age 51, unknown 114.4
1904 Male, age 53, unknown 114.0
1821 Female, age 72, unknown 107.0
2769 Male, age 72, unknown 103.4
2503 Female, age 72, unknown 101.3
2227 Male, age 72, unknown 99.1
2588 Male, age 74, left hemisphere 96.2
2823 Male, age 76, right hemisphere 92.0
1954 Female, age 42, unknown 91.3
2785 Male, age 18, unknown 90.8
2725 Female, age 75, unknown 68.5
2584 Male, age 75, left hemisphere 61.5
Substantia nigra
nTPM: 59.7
2409 Female, age 72, unknown 68.0
1851 Male, age 51, unknown 67.7
2699 Male, age 18, unknown 67.3
2583 Male, age 75, right hemisphere 65.0
2590 Female, age 75, unknown 64.7
1889 Female, age 72, unknown 60.5
2665 Male, age 74, both hemispheres 57.4
1916 Female, age 42, unknown 52.7
1941 Male, age 53, unknown 49.4
2241 Male, age 72, unknown 44.0
Superior colliculus
nTPM: 58.9
1913 Female, age 42, unknown 79.2
1995 Male, age 72, unknown 75.5
2587 Male, age 74, left hemisphere 66.3
1839 Male, age 51, unknown 64.3
1895 Male, age 76, right hemisphere 63.3
2668 Female, age 75, unknown 60.0
2664 Male, age 75, both hemispheres 56.4
1796 Male, age 53, unknown 47.4
2087 Female, age 72, unknown 38.9
2261 Male, age 18, unknown 37.8
Ventral tegmental area
nTPM: 64.8
2223 Female, age 72, unknown 88.5
2410 Female, age 72, unknown 74.4
1915 Female, age 42, unknown 58.8
2021 Male, age 53, unknown 55.7
2218 Male, age 76, both hemispheres 55.7
1942 Male, age 51, unknown 55.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 12.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 12.3
Samples: 183

Max nTPM: 33.9
Min nTPM: 2.6
Std nTPM: 4.8
Median nTPM: 11.3
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 33.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 32.4
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 26.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 23.9
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 22.8
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 22.2
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 21.9
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 21.3
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 20.9
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 20.4
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 20.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 84.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 84.3
FF:10158-103A5 76 years, female 84.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 48.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 45.4
Samples: 4

Max nTPM: 65.2
Min nTPM: 37.9
Sample A Female 40.0
Sample B Female 37.9
Sample C Male 38.5
Sample D Male 65.2
Midbrain
nTPM: 48.9
Samples: 4

Max nTPM: 85.0
Min nTPM: 30.5
Sample A Female 85.0
Sample B Female 47.8
Sample C Male 32.2
Sample D Male 30.5
Periaqueductal gray
nTPM: 35.9
Samples: 3

Max nTPM: 43.1
Min nTPM: 29.2
Sample B Female 43.1
Sample C Male 29.2
Sample D Male 35.3
Superior colliculi
nTPM: 39.4
Samples: 4

Max nTPM: 43.8
Min nTPM: 35.9
Sample A Female 36.5
Sample B Female 35.9
Sample C Male 41.2
Sample D Male 43.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 21.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 21.9
Samples: 4

Max nTPM: 22.7
Min nTPM: 21.6
Sample A Male 21.7
Sample B Male 21.7
Sample C Female 22.7
Sample D Female 21.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
71147858 Antisense, RP_050719_02_E09, Mouse strain C57BL/6J (56 days, male) 0.7

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