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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:76.5 nTPM
HPA Brain:65.8 nTPM
GTEx:76.5 nTPM
FANTOM5:46.2 Scaled Tags Per Million
Pig:59.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

65.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 57.7
2816 Male, age 47, midline 71.9
2194 Female, age 79, both hemispheres 66.7
1981 Female, age 72, midline 52.3
2565 Male, age 75, midline 50.4
2048 Male, age 55, midline 47.1
Cervical spinal cord, dorsal horn
nTPM: 59.7
2296 Male, age 66, both hemispheres 91.2
2173 Female, age 72, unknown 63.0
1877 Male, age 55, unknown 55.3
2721 Male, age 90, both hemispheres 52.0
2069 Male, age 47, both hemispheres 48.9
2297 Male, age 75, both hemispheres 47.7
Cervical spinal cord, ventral horn
nTPM: 65.8
2068 Male, age 55, unknown 92.8
2820 Female, age 79, both hemispheres 81.4
2480 Male, age 75, both hemispheres 67.1
2295 Male, age 66, both hemispheres 61.1
2809 Male, age 90, both hemispheres 51.8
2098 Female, age 72, unknown 40.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

76.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 76.5
Samples: 204

Max nTPM: 162.0
Min nTPM: 20.4
Std nTPM: 26.5
Median nTPM: 74.6
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 162.0
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 151.5
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 143.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 139.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 130.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 128.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 126.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 125.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 125.6
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 125.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 125.3
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 124.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 123.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 122.0
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 120.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 119.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 119.1
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 118.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 118.4
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 114.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 112.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 111.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 108.5
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 108.4
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 108.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 106.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 106.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 105.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 104.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 104.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 103.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 102.9
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 102.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 101.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 100.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 100.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 100.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 100.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 99.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 98.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 97.7
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 97.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 96.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 96.6
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 96.2
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 95.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 95.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 95.1
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 94.9
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 94.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 93.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 93.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 93.4
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 92.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 92.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 92.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 92.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 90.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 90.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 88.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 88.4
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 87.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 87.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 86.4
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 86.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 86.0
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 85.4
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 84.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 84.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 84.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 84.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 84.0
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 83.8
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 83.8
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 83.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 83.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 83.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 83.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 83.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 82.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 82.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 81.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 81.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 80.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 80.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 80.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 80.2
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 79.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 78.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 78.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 78.7
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 78.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 77.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 77.7
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 77.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 76.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 75.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 75.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 75.4
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 75.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 75.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 75.1
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 74.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 73.1
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 72.6
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 72.5
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 72.2
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 71.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 71.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 71.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 70.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 70.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 70.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 69.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 69.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 69.6
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 69.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 68.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 68.6
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 68.2
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 68.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 68.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 67.7
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 67.7
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 67.4
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 67.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 66.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 66.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 66.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 66.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 66.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 66.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 66.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 66.1
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 65.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 64.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 64.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 64.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 64.0
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 63.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 63.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 63.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 63.0
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 62.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 62.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 62.3
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 62.1
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 61.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 60.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 59.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 59.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 59.2
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 59.2
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 58.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 58.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 58.1
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 58.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 57.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 57.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 57.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 57.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 56.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 56.2
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 54.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 53.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 53.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 51.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 49.9
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 49.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 49.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 49.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 49.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 49.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 47.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 47.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 46.9
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 46.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 46.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 45.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 44.7
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 43.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 42.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 42.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 42.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 42.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 41.8
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 41.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 41.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 40.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 39.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 39.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 39.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 35.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 34.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 33.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 31.3
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 31.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 31.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 30.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 30.4
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 25.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 22.1
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 21.1
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 20.4
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

46.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 46.2
FF:10181-103D1 60 years, female 52.2
FF:10159-103A6 76 years, female 40.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

59.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 52.8
Samples: 4

Max nTPM: 67.4
Min nTPM: 29.8
Sample A Female 67.4
Sample B Female 47.8
Sample C Male 29.8
Sample D Male 66.2
Ventral spinal cord
nTPM: 59.2
Samples: 4

Max nTPM: 71.7
Min nTPM: 50.2
Sample A Female 71.7
Sample B Female 50.2
Sample C Male 51.1
Sample D Male 63.8

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