MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:49.2 nTPM
HPA Brain:96.4 nTPM
GTEx:49.2 nTPM
FANTOM5:58.8 Scaled Tags Per Million
Pig:70.6 nTPM
Mouse:32.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 96.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 82.4
2586 Male, age 75, left hemisphere 106.0
1830 Male, age 51, unknown 93.2
2019 Male, age 18, unknown 87.0
2219 Male, age 76, both hemispheres 86.5
2411 Female, age 72, unknown 83.0
1833 Male, age 53, unknown 82.1
2666 Male, age 74, left hemisphere 78.1
2828 Female, age 72, unknown 74.5
1870 Female, age 42, unknown 71.7
1827 Male, age 72, unknown 61.5
Dorsal raphe nucleus
nTPM: 58.7
2750 Male, age 76, both hemispheres 94.4
2016 Female, age 72, unknown 62.8
1828 Male, age 53, unknown 52.5
2047 Male, age 72, unknown 46.8
2298 Female, age 72, unknown 37.1
Inferior colliculus
nTPM: 50.3
2849 Male, age 72, unknown 63.8
1890 Male, age 53, unknown 53.9
1848 Female, age 42, unknown 51.3
2097 Female, age 72, unknown 32.2
Median raphe nucleus
nTPM: 64.3
2220 Male, age 76, midline 64.3
Periaquaductal grey, anterior
nTPM: 64.4
1947 Male, age 18, unknown 78.9
2502 Female, age 75, unknown 60.6
1795 Male, age 51, unknown 53.6
Periaquaductal grey, dorsal
nTPM: 41.8
2464 Female, age 72, unknown 57.6
1831 Male, age 72, unknown 45.3
1840 Male, age 53, unknown 32.7
2850 Male, age 76, both hemispheres 31.6
Periaquaductal grey, lateral
nTPM: 53.8
2272 Male, age 74, both hemispheres 67.4
2053 Male, age 18, unknown 55.1
2140 Male, age 76, both hemispheres 39.0
Pretectal area
nTPM: 55.3
2316 Male, age 76, right hemisphere 90.5
2407 Male, age 75, both hemispheres 86.4
1815 Male, age 53, unknown 64.5
2007 Male, age 72, unknown 58.9
2825 Male, age 18, unknown 55.4
1817 Female, age 42, unknown 46.0
2224 Female, age 72, unknown 45.8
2273 Male, age 74, both hemispheres 45.3
1944 Female, age 72, unknown 43.6
1816 Male, age 51, unknown 38.8
2667 Female, age 75, unknown 33.5
Red nucleus
nTPM: 96.4
2823 Male, age 76, right hemisphere 119.3
2584 Male, age 75, left hemisphere 115.5
2769 Male, age 72, unknown 113.6
2588 Male, age 74, left hemisphere 112.4
2227 Male, age 72, unknown 110.2
1904 Male, age 53, unknown 101.0
1865 Male, age 51, unknown 98.5
2503 Female, age 72, unknown 90.1
2785 Male, age 18, unknown 84.5
2725 Female, age 75, unknown 80.5
1954 Female, age 42, unknown 69.1
1821 Female, age 72, unknown 61.9
Substantia nigra
nTPM: 61.5
2583 Male, age 75, right hemisphere 101.0
2590 Female, age 75, unknown 83.2
1851 Male, age 51, unknown 67.1
1941 Male, age 53, unknown 64.3
2699 Male, age 18, unknown 57.0
2409 Female, age 72, unknown 55.3
1916 Female, age 42, unknown 52.8
2665 Male, age 74, both hemispheres 51.2
1889 Female, age 72, unknown 50.7
2241 Male, age 72, unknown 32.0
Superior colliculus
nTPM: 72.1
1913 Female, age 42, unknown 98.8
2668 Female, age 75, unknown 95.7
1995 Male, age 72, unknown 88.9
1839 Male, age 51, unknown 77.6
2587 Male, age 74, left hemisphere 71.9
1895 Male, age 76, right hemisphere 68.0
1796 Male, age 53, unknown 61.9
2664 Male, age 75, both hemispheres 60.9
2261 Male, age 18, unknown 55.5
2087 Female, age 72, unknown 41.8
Ventral tegmental area
nTPM: 67.9
2223 Female, age 72, unknown 78.0
2410 Female, age 72, unknown 73.5
1942 Male, age 51, unknown 72.1
2218 Male, age 76, both hemispheres 64.8
2021 Male, age 53, unknown 63.6
1915 Female, age 42, unknown 55.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 49.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 49.2
Samples: 183

Max nTPM: 224.6
Min nTPM: 6.9
Std nTPM: 31.7
Median nTPM: 41.9
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 224.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 200.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 170.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 170.1
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 169.4
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 125.8
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 124.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 112.9
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 101.5
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 95.5
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 91.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 58.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 58.8
FF:10158-103A5 76 years, female 58.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 70.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 69.6
Samples: 4

Max nTPM: 91.8
Min nTPM: 42.0
Sample A Female 65.2
Sample B Female 42.0
Sample C Male 79.5
Sample D Male 91.8
Midbrain
nTPM: 70.6
Samples: 4

Max nTPM: 82.9
Min nTPM: 58.8
Sample A Female 82.9
Sample B Female 58.8
Sample C Male 73.0
Sample D Male 67.7
Periaqueductal gray
nTPM: 52.2
Samples: 3

Max nTPM: 54.1
Min nTPM: 50.2
Sample B Female 54.1
Sample C Male 50.2
Sample D Male 52.2
Superior colliculi
nTPM: 60.2
Samples: 4

Max nTPM: 84.0
Min nTPM: 27.9
Sample A Female 57.2
Sample B Female 27.9
Sample C Male 71.8
Sample D Male 84.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 32.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 32.3
Samples: 4

Max nTPM: 33.8
Min nTPM: 30.3
Sample A Male 32.7
Sample B Male 30.3
Sample C Female 33.8
Sample D Female 32.5

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