A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
44.1
nTPM
Monaco:
15.7
nTPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
44.1
HPA sample
nTPM
gdT-cell nTPM: 44.0
Samples: 6
Max nTPM: 64.9
Min nTPM: 27.7
P10809_1007
27.7
P10809_1022
45.9
P10809_1041
64.9
P10809_1060
37.8
P10809_1077
43.3
P10809_1098
44.2
MAIT T-cell nTPM: 42.3
Samples: 6
Max nTPM: 62.7
Min nTPM: 27.1
P10809_1006
27.1
P10809_1024
33.8
P10809_1043
42.7
P10809_1062
48.7
P10809_1083
38.5
P10809_1097
62.7
Memory CD4 T-cell nTPM: 39.1
Samples: 6
Max nTPM: 54.1
Min nTPM: 25.2
P10809_1014
25.2
P10809_1026
54.1
P10809_1045
39.7
P10809_1064
34.3
P10809_1086
39.7
P10809_1113
41.3
Memory CD8 T-cell nTPM: 44.1
Samples: 5
Max nTPM: 53.5
Min nTPM: 26.4
P10809_1012
26.4
P10809_1027
53.5
P10809_1046
50.0
P10809_1065
42.9
P10809_1111
47.7
Naive CD4 T-cell nTPM: 29.3
Samples: 6
Max nTPM: 52.4
Min nTPM: 20.2
P10809_1015
20.2
P10809_1030
24.5
P10809_1049
52.4
P10809_1068
28.1
P10809_1085
23.7
P10809_1112
26.8
Naive CD8 T-cell nTPM: 32.7
Samples: 6
Max nTPM: 44.4
Min nTPM: 20.1
P10809_1016
20.1
P10809_1031
44.4
P10809_1050
26.1
P10809_1069
43.3
P10809_1087
34.4
P10809_1110
27.9
T-reg nTPM: 37.1
Samples: 6
Max nTPM: 49.1
Min nTPM: 15.7
P10809_1018
29.5
P10809_1037
15.7
P10809_1056
41.5
P10809_1075
38.9
P10809_1094
47.9
P10809_1106
49.1
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
15.7
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 10.0
Samples: 4
Max nTPM: 14.6
Min nTPM: 4.7
RHH5202_R3573
14.6
RHH5230_R3602
4.7
RHH5259_R3631
9.4
RHH5288_R3660
11.3
Effector memory CD8 T-cell nTPM: 9.7
Samples: 4
Max nTPM: 18.1
Min nTPM: 1.9
RHH5203_R3574
18.1
RHH5231_R3603
12.4
RHH5260_R3632
6.2
RHH5289_R3661
1.9
MAIT T-cell nTPM: 12.2
Samples: 4
Max nTPM: 16.6
Min nTPM: 8.0
RHH5233_R3605
8.0
RHH5205_R3576
9.9
RHH5262_R3634
14.1
RHH5297_R3663
16.6
Memory CD4 T-cell TFH nTPM: 14.1
Samples: 4
Max nTPM: 21.2
Min nTPM: 9.6
RHH5300_R3666
21.2
RHH5236_R3608
9.6
RHH5265_R3637
15.8
RHH5208_R3579
9.7
Memory CD4 T-cell Th1 nTPM: 12.3
Samples: 4
Max nTPM: 18.1
Min nTPM: 6.6
RHH5210_R3581
18.1
RHH5302_R3668
17.3
RHH5238_R3610
6.6
RHH5267_R3639
7.1
Memory CD4 T-cell Th1/Th17 nTPM: 10.4
Samples: 4
Max nTPM: 20.6
Min nTPM: 1.2
RHH5303_R3669
11.7
RHH5211_R3582
20.6
RHH5239_R3611
1.2
RHH5268_R3640
7.9
Memory CD4 T-cell Th17 nTPM: 13.5
Samples: 4
Max nTPM: 29.7
Min nTPM: 2.3
RHH5304_R3670
4.4
RHH5212_R3583
29.7
RHH5240_R3612
2.3
RHH5269_R3641
17.5
Memory CD4 T-cell Th2 nTPM: 9.6
Samples: 4
Max nTPM: 16.4
Min nTPM: 4.7
RHH5305_R3671
6.4
RHH5213_R3584
11.1
RHH5241_R3613
4.7
RHH5270_R3642
16.4
Naive CD4 T-cell nTPM: 6.4
Samples: 4
Max nTPM: 10.7
Min nTPM: 3.4
RHH5306_R3672
10.7
RHH5214_R3585
8.2
RHH5242_R3614
3.4
RHH5271_R3643
3.5
Naive CD8 T-cell nTPM: 3.6
Samples: 4
Max nTPM: 6.7
Min nTPM: 1.9
RHH5201_R3572
2.4
RHH5229_R3601
1.9
RHH5258_R3630
6.7
RHH5287_R3659
3.2
Non-Vd2 gdTCR nTPM: 12.3
Samples: 4
Max nTPM: 20.5
Min nTPM: 2.0
RHH5235_R3607
2.0
RHH5264_R3636
20.5
RHH5207_R3578
13.4
RHH5299_R3665
13.4
T-reg nTPM: 9.7
Samples: 4
Max nTPM: 11.4
Min nTPM: 8.1
RHH5301_R3667
9.9
RHH5237_R3609
9.2
RHH5266_R3638
8.1
RHH5209_R3580
11.4
Terminal effector memory CD4 T-cell nTPM: 10.9
Samples: 2
Max nTPM: 17.6
Min nTPM: 4.1
RHH5243_R3615
4.1
RHH5272_R3644
17.6
Terminal effector memory CD8 T-cell nTPM: 15.7
Samples: 4
Max nTPM: 25.8
Min nTPM: 9.7
RHH5232_R3604
9.7
RHH5204_R3575
25.8
RHH5261_R3633
11.6
RHH5296_R3662
15.5
Vd2 gdTCR nTPM: 11.2
Samples: 4
Max nTPM: 26.1
Min nTPM: 1.8
RHH5234_R3606
5.1
RHH5206_R3577
26.1
RHH5263_R3635
1.8
RHH5298_R3664
11.6
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