BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
HPA Brain:0.2 nTPM
FANTOM5:0.0 Scaled Tags Per Million
Macaque:0.6 nTPM
Pig:2.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 0.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 0.0
1870 Female, age 42, unknown 0.2
1830 Male, age 51, unknown 0.1
2828 Female, age 72, unknown 0.1
1827 Male, age 72, unknown 0.0
1833 Male, age 53, unknown 0.0
2019 Male, age 18, unknown 0.0
2219 Male, age 76, both hemispheres 0.0
2411 Female, age 72, unknown 0.0
2586 Male, age 75, left hemisphere 0.0
2666 Male, age 74, left hemisphere 0.0
Dorsal raphe nucleus
nTPM: 0.0
1828 Male, age 53, unknown 0.1
2016 Female, age 72, unknown 0.0
2047 Male, age 72, unknown 0.0
2298 Female, age 72, unknown 0.0
2750 Male, age 76, both hemispheres 0.0
Inferior colliculus
nTPM: 0.0
1848 Female, age 42, unknown 0.1
1890 Male, age 53, unknown 0.0
2097 Female, age 72, unknown 0.0
2849 Male, age 72, unknown 0.0
Median raphe nucleus
nTPM: 0.0
2220 Male, age 76, midline 0.0
Periaquaductal grey, anterior
nTPM: 0.2
2502 Female, age 75, unknown 0.3
1947 Male, age 18, unknown 0.2
1795 Male, age 51, unknown 0.1
Periaquaductal grey, dorsal
nTPM: 0.1
1831 Male, age 72, unknown 0.2
1840 Male, age 53, unknown 0.1
2464 Female, age 72, unknown 0.1
2850 Male, age 76, both hemispheres 0.0
Periaquaductal grey, lateral
nTPM: 0.0
2140 Male, age 76, both hemispheres 0.1
2053 Male, age 18, unknown 0.0
2272 Male, age 74, both hemispheres 0.0
Pretectal area
nTPM: 0.2
2407 Male, age 75, both hemispheres 0.8
1944 Female, age 72, unknown 0.3
2316 Male, age 76, right hemisphere 0.3
2667 Female, age 75, unknown 0.2
1816 Male, age 51, unknown 0.1
1817 Female, age 42, unknown 0.1
1815 Male, age 53, unknown 0.0
2007 Male, age 72, unknown 0.0
2224 Female, age 72, unknown 0.0
2273 Male, age 74, both hemispheres 0.0
2825 Male, age 18, unknown 0.0
Red nucleus
nTPM: 0.1
1821 Female, age 72, unknown 0.2
2227 Male, age 72, unknown 0.2
1865 Male, age 51, unknown 0.1
1954 Female, age 42, unknown 0.1
2503 Female, age 72, unknown 0.1
2725 Female, age 75, unknown 0.1
1904 Male, age 53, unknown 0.0
2584 Male, age 75, left hemisphere 0.0
2588 Male, age 74, left hemisphere 0.0
2769 Male, age 72, unknown 0.0
2785 Male, age 18, unknown 0.0
2823 Male, age 76, right hemisphere 0.0
Substantia nigra
nTPM: 0.1
2665 Male, age 74, both hemispheres 0.4
1851 Male, age 51, unknown 0.1
1916 Female, age 42, unknown 0.1
1889 Female, age 72, unknown 0.0
1941 Male, age 53, unknown 0.0
2241 Male, age 72, unknown 0.0
2409 Female, age 72, unknown 0.0
2583 Male, age 75, right hemisphere 0.0
2590 Female, age 75, unknown 0.0
2699 Male, age 18, unknown 0.0
Superior colliculus
nTPM: 0.1
1796 Male, age 53, unknown 0.3
2664 Male, age 75, both hemispheres 0.3
1995 Male, age 72, unknown 0.2
1839 Male, age 51, unknown 0.1
1913 Female, age 42, unknown 0.1
2087 Female, age 72, unknown 0.1
1895 Male, age 76, right hemisphere 0.0
2261 Male, age 18, unknown 0.0
2587 Male, age 74, left hemisphere 0.0
2668 Female, age 75, unknown 0.0
Ventral tegmental area
nTPM: 0.0
1915 Female, age 42, unknown 0.1
1942 Male, age 51, unknown 0.1
2223 Female, age 72, unknown 0.1
2021 Male, age 53, unknown 0.0
2218 Male, age 76, both hemispheres 0.0
2410 Female, age 72, unknown 0.0

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 0.0
FF:10158-103A5 76 years, female 0.0

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 0.6
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 0.6
Samples: 1

Max nTPM: 0.6
Min nTPM: 0.6
Sample A 0.6
Midbrain
nTPM: 0.5
Samples: 1

Max nTPM: 0.5
Min nTPM: 0.5
Sample A 0.5
Superior colliculi
nTPM: 0.5
Samples: 1

Max nTPM: 0.5
Min nTPM: 0.5
Sample A 0.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 2.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 1.4
Samples: 3

Max nTPM: 2.0
Min nTPM: 0.7
Sample A Female 0.7
Sample B Female 2.0
Sample C Male 1.5
Midbrain
nTPM: 1.9
Samples: 3

Max nTPM: 2.3
Min nTPM: 1.5
Sample B Female 2.3
Sample C Male 1.5
Sample D Male 1.8
Periaqueductal gray
nTPM: 2.0
Samples: 3

Max nTPM: 2.2
Min nTPM: 1.8
Sample B Female 1.8
Sample C Male 1.9
Sample D Male 2.2
Superior colliculi
nTPM: 1.3
Samples: 4

Max nTPM: 1.7
Min nTPM: 0.9
Sample A Female 0.9
Sample B Female 1.7
Sample C Male 1.3
Sample D Male 1.3

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