A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
88.1
nTPM
Monaco:
91.3
nTPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
88.1
HPA sample
nTPM
gdT-cell nTPM: 38.8
Samples: 6
Max nTPM: 52.1
Min nTPM: 33.1
P10809_1007
33.5
P10809_1022
52.1
P10809_1041
44.9
P10809_1060
33.1
P10809_1077
35.0
P10809_1098
34.4
MAIT T-cell nTPM: 43.4
Samples: 6
Max nTPM: 60.8
Min nTPM: 31.7
P10809_1006
31.7
P10809_1024
60.8
P10809_1043
50.1
P10809_1062
43.5
P10809_1083
35.8
P10809_1097
38.3
Memory CD4 T-cell nTPM: 55.0
Samples: 6
Max nTPM: 68.0
Min nTPM: 43.7
P10809_1014
49.7
P10809_1026
57.8
P10809_1045
68.0
P10809_1064
55.0
P10809_1086
43.7
P10809_1113
55.9
Memory CD8 T-cell nTPM: 38.4
Samples: 5
Max nTPM: 43.4
Min nTPM: 33.0
P10809_1012
41.0
P10809_1027
36.4
P10809_1046
43.4
P10809_1065
33.0
P10809_1111
38.2
Naive CD4 T-cell nTPM: 45.1
Samples: 6
Max nTPM: 64.4
Min nTPM: 28.4
P10809_1015
32.2
P10809_1030
50.5
P10809_1049
64.4
P10809_1068
51.8
P10809_1085
28.4
P10809_1112
43.0
Naive CD8 T-cell nTPM: 36.9
Samples: 6
Max nTPM: 47.4
Min nTPM: 28.2
P10809_1016
28.2
P10809_1031
39.5
P10809_1050
38.8
P10809_1069
47.4
P10809_1087
34.0
P10809_1110
33.8
T-reg nTPM: 88.1
Samples: 6
Max nTPM: 128.9
Min nTPM: 69.3
P10809_1018
78.1
P10809_1037
95.4
P10809_1056
128.9
P10809_1075
84.0
P10809_1094
73.1
P10809_1106
69.3
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
91.3
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 70.1
Samples: 4
Max nTPM: 81.9
Min nTPM: 51.3
RHH5202_R3573
76.6
RHH5230_R3602
51.3
RHH5259_R3631
81.9
RHH5288_R3660
70.6
Effector memory CD8 T-cell nTPM: 52.6
Samples: 4
Max nTPM: 60.5
Min nTPM: 41.9
RHH5203_R3574
60.5
RHH5231_R3603
54.3
RHH5260_R3632
41.9
RHH5289_R3661
53.5
MAIT T-cell nTPM: 62.8
Samples: 4
Max nTPM: 70.5
Min nTPM: 46.3
RHH5233_R3605
64.7
RHH5205_R3576
69.7
RHH5262_R3634
46.3
RHH5297_R3663
70.5
Memory CD4 T-cell TFH nTPM: 87.5
Samples: 4
Max nTPM: 92.0
Min nTPM: 80.2
RHH5300_R3666
92.0
RHH5236_R3608
80.2
RHH5265_R3637
87.1
RHH5208_R3579
90.8
Memory CD4 T-cell Th1 nTPM: 89.0
Samples: 4
Max nTPM: 123.6
Min nTPM: 57.1
RHH5210_R3581
93.0
RHH5302_R3668
82.4
RHH5238_R3610
123.6
RHH5267_R3639
57.1
Memory CD4 T-cell Th1/Th17 nTPM: 91.3
Samples: 4
Max nTPM: 104.2
Min nTPM: 73.8
RHH5303_R3669
87.2
RHH5211_R3582
104.2
RHH5239_R3611
100.1
RHH5268_R3640
73.8
Memory CD4 T-cell Th17 nTPM: 87.3
Samples: 4
Max nTPM: 96.7
Min nTPM: 80.7
RHH5304_R3670
82.8
RHH5212_R3583
96.7
RHH5240_R3612
88.8
RHH5269_R3641
80.7
Memory CD4 T-cell Th2 nTPM: 76.1
Samples: 4
Max nTPM: 94.5
Min nTPM: 53.3
RHH5305_R3671
69.7
RHH5213_R3584
87.0
RHH5241_R3613
94.5
RHH5270_R3642
53.3
Naive CD4 T-cell nTPM: 77.9
Samples: 4
Max nTPM: 113.2
Min nTPM: 53.7
RHH5306_R3672
66.1
RHH5214_R3585
113.2
RHH5242_R3614
78.5
RHH5271_R3643
53.7
Naive CD8 T-cell nTPM: 52.3
Samples: 4
Max nTPM: 62.7
Min nTPM: 42.4
RHH5201_R3572
53.6
RHH5229_R3601
50.5
RHH5258_R3630
42.4
RHH5287_R3659
62.7
Non-Vd2 gdTCR nTPM: 45.3
Samples: 4
Max nTPM: 49.1
Min nTPM: 36.4
RHH5235_R3607
48.5
RHH5264_R3636
36.4
RHH5207_R3578
47.3
RHH5299_R3665
49.1
T-reg nTPM: 70.7
Samples: 4
Max nTPM: 84.2
Min nTPM: 56.8
RHH5301_R3667
84.2
RHH5237_R3609
65.9
RHH5266_R3638
56.8
RHH5209_R3580
75.7
Terminal effector memory CD4 T-cell nTPM: 69.1
Samples: 2
Max nTPM: 76.1
Min nTPM: 62.0
RHH5243_R3615
76.1
RHH5272_R3644
62.0
Terminal effector memory CD8 T-cell nTPM: 44.6
Samples: 4
Max nTPM: 54.6
Min nTPM: 32.7
RHH5232_R3604
41.0
RHH5204_R3575
49.9
RHH5261_R3633
32.7
RHH5296_R3662
54.6
Vd2 gdTCR nTPM: 60.8
Samples: 4
Max nTPM: 89.3
Min nTPM: 46.4
RHH5234_R3606
58.9
RHH5206_R3577
48.5
RHH5263_R3635
46.4
RHH5298_R3664
89.3
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