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Relative protein amount measured using Deep Visual Proteomics. Here, on the detail page, all the biological replicates are shown, compared to the median value displayed on the gene summary page. The matched, selected single cell type clusters for the RNA-Protein comparison is also shown. The selected Cell Type clusters have the same name and ID as in the original dataset, above.
Below, we show a thumbnail overview of the tissue section used for the DVP, as well as smaller cropped area, that is clickable for a high-resolution zoomable image, where you can switch on and off the segmentation mask that was used for sample collection.
Learn more about the DVP method and different markers used the cell types here
Immunofluorescence image with DVP segmentation contours, high resolution cropped area with cell type markers (More info). This is kidney, and includes EpCAM as general epithelial marker as well as AQP1 labeling proximal tubules and L1CAM labeling of collecting ducts.
Cell type
Glomeruli
RNA
Cluster
Cell type
Expression (nCPM)
Protein
Sample name
Intensity
Glomeruli_01
ND
Glomeruli_02
ND
Glomeruli_03
ND
Glomeruli_04
ND
Immunofluorescence image with DVP segmentation contours, high resolution cropped area with cell type markers (More info). This is kidney, and includes PODXL labeling of glomerular podocytes.
Cell type
Proximal tubules
RNA
Cluster
Cell type
Expression (nCPM)
Protein
Sample name
Intensity
Proximal tubules_01
ND
Proximal tubules_02
ND
Proximal tubules_03
ND
Proximal tubules_04
ND
Proximal tubules_05
ND
Immunofluorescence image with DVP segmentation contours, high resolution cropped area with cell type markers (More info). This is kidney, and includes EpCAM as general epithelial marker as well as AQP1 labeling proximal tubules and L1CAM labeling of collecting ducts.
Cell type
Distal tubules
RNA
Cluster
Cell type
Expression (nCPM)
Protein
Sample name
Intensity
Distal tubules_01
ND
Distal tubules_02
ND
Distal tubules_03
ND
Distal tubules_04
ND
Distal tubules_05
ND
Immunofluorescence image with DVP segmentation contours, high resolution cropped area with cell type markers (More info). This is kidney, and includes EpCAM as general epithelial marker as well as AQP1 labeling proximal tubules and L1CAM labeling of collecting ducts.