BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
HPA Brain:13.3 nTPM
FANTOM5:22.4 Scaled Tags Per Million
Macaque:31.0 nTPM
Mouse:31.8 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 13.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 12.1
2586 Male, age 75, left hemisphere 19.4
1827 Male, age 72, unknown 13.7
2828 Female, age 72, unknown 12.2
2666 Male, age 74, left hemisphere 12.1
2019 Male, age 18, unknown 11.1
1833 Male, age 53, unknown 10.9
2219 Male, age 76, both hemispheres 10.8
2411 Female, age 72, unknown 10.8
1830 Male, age 51, unknown 10.6
1870 Female, age 42, unknown 9.7
Dorsal raphe nucleus
nTPM: 11.6
2298 Female, age 72, unknown 14.0
2047 Male, age 72, unknown 12.5
1828 Male, age 53, unknown 11.8
2016 Female, age 72, unknown 10.4
2750 Male, age 76, both hemispheres 9.4
Inferior colliculus
nTPM: 11.5
2849 Male, age 72, unknown 13.0
1848 Female, age 42, unknown 12.5
2097 Female, age 72, unknown 11.3
1890 Male, age 53, unknown 9.3
Median raphe nucleus
nTPM: 12.4
2220 Male, age 76, midline 12.4
Periaquaductal grey, anterior
nTPM: 11.1
2502 Female, age 75, unknown 12.9
1947 Male, age 18, unknown 10.7
1795 Male, age 51, unknown 9.8
Periaquaductal grey, dorsal
nTPM: 13.3
1840 Male, age 53, unknown 15.7
1831 Male, age 72, unknown 14.2
2850 Male, age 76, both hemispheres 11.6
2464 Female, age 72, unknown 11.5
Periaquaductal grey, lateral
nTPM: 11.4
2053 Male, age 18, unknown 13.5
2272 Male, age 74, both hemispheres 11.0
2140 Male, age 76, both hemispheres 9.7
Pretectal area
nTPM: 12.3
1816 Male, age 51, unknown 16.9
1817 Female, age 42, unknown 16.6
1944 Female, age 72, unknown 13.1
2825 Male, age 18, unknown 13.1
1815 Male, age 53, unknown 12.5
2224 Female, age 72, unknown 11.7
2407 Male, age 75, both hemispheres 11.3
2667 Female, age 75, unknown 11.1
2007 Male, age 72, unknown 10.6
2316 Male, age 76, right hemisphere 9.9
2273 Male, age 74, both hemispheres 8.9
Red nucleus
nTPM: 9.9
1821 Female, age 72, unknown 12.0
1865 Male, age 51, unknown 11.3
2588 Male, age 74, left hemisphere 11.2
2584 Male, age 75, left hemisphere 11.1
2823 Male, age 76, right hemisphere 10.3
2503 Female, age 72, unknown 10.2
1904 Male, age 53, unknown 10.1
1954 Female, age 42, unknown 9.6
2227 Male, age 72, unknown 9.6
2725 Female, age 75, unknown 9.1
2785 Male, age 18, unknown 8.3
2769 Male, age 72, unknown 6.2
Substantia nigra
nTPM: 12.5
1916 Female, age 42, unknown 14.2
2241 Male, age 72, unknown 14.2
2665 Male, age 74, both hemispheres 13.6
2699 Male, age 18, unknown 13.2
1851 Male, age 51, unknown 12.8
2583 Male, age 75, right hemisphere 12.1
2590 Female, age 75, unknown 11.7
1889 Female, age 72, unknown 11.5
1941 Male, age 53, unknown 10.9
2409 Female, age 72, unknown 10.4
Superior colliculus
nTPM: 12.1
2087 Female, age 72, unknown 14.9
1796 Male, age 53, unknown 14.4
2664 Male, age 75, both hemispheres 13.2
2668 Female, age 75, unknown 12.8
1995 Male, age 72, unknown 12.2
2261 Male, age 18, unknown 11.3
1839 Male, age 51, unknown 11.1
1913 Female, age 42, unknown 10.9
2587 Male, age 74, left hemisphere 9.9
1895 Male, age 76, right hemisphere 9.7
Ventral tegmental area
nTPM: 12.5
2410 Female, age 72, unknown 15.5
2218 Male, age 76, both hemispheres 15.1
2021 Male, age 53, unknown 12.1
2223 Female, age 72, unknown 11.5
1915 Female, age 42, unknown 10.9
1942 Male, age 51, unknown 10.1

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 22.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 22.4
FF:10158-103A5 76 years, female 22.4

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 31.0
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 24.7
Samples: 1

Max nTPM: 24.7
Min nTPM: 24.7
Sample A 24.7
Midbrain
nTPM: 26.0
Samples: 1

Max nTPM: 26.0
Min nTPM: 26.0
Sample A 26.0
Superior colliculi
nTPM: 31.0
Samples: 1

Max nTPM: 31.0
Min nTPM: 31.0
Sample A 31.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 31.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 31.8
Samples: 4

Max nTPM: 33.2
Min nTPM: 30.3
Sample A 30.3
Sample B 33.2
Sample C 32.8
Sample D 31.0

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