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Single cell type methods
Single cell type dataOverview of the included samples and data in the Single Cell Type Resource, the details on this page is for the samples included in the aggregated cell type comparison (based on the 154 cell types in the Cell type data- table, a comparison with the external clustering done by Tabula Sapiens is further described and can be found here.
Tissue datasetsRead count per gene and cell in 36 datasets. The zip-archive contains one folder for each dataset with 2 files each, one tab-separated file in matrix format with Ensembl gene identifiers as rows and single cells as columns and one tab-seperated file with metadata for each cell. Tissues
Cell type group dataTranscript expression levels summarized per gene in 53 cell types from 36 datasets. The tab-separated file includes Ensembl gene identifier ("Gene"), gene name ("Gene name"), analysed sample ("Cell type") and normalized expresion ("nCPM"). Cell type groups
Cell type dataTranscript expression levels summarized per gene in 154 cell types from 36 datasets. The tab-separated file includes Ensembl gene identifier ("Gene"), gene name ("Gene name"), analysed sample ("Cell type") and normalized expresion ("nCPM"). Cell types
Cluster dataTranscript expression levels summarized per gene and cluster in 36 datasets. The tab-separated file includes Ensembl gene identifier ("Gene"), gene name ("Gene name"), tissue ("Tissue"), analysed sample ("Cell type"), cluster ("Cluster"), read count ("Read count") and normalized expression ("nCPM"). Clusters
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The Human Protein Atlas project is funded
