A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
4.2
nTPM
Monaco:
12.0
nTPM
Schmiedel:
31.9
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4.2
HPA sample
nTPM
NK-cell nTPM: 4.2
Samples: 6
Max nTPM: 15.9
Min nTPM: 0.0
P10809_1013
0.7
P10809_1033
1.0
P10809_1052
0.8
P10809_1071
0.0
P10809_1093
15.9
P10809_1103
6.7
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
12.0
Monaco sample
nTPM
NK-cell nTPM: 12.0
Samples: 4
Max nTPM: 14.9
Min nTPM: 8.9
RHH5316_R3683
9.9
RHH5224_R3596
14.1
RHH5253_R3625
8.9
RHH5282_R3654
14.9
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
31.9
Schmiedel sample id
TPM
NK-cell TPM: 31.9
Samples: 90
Max TPM: 46.4
Min TPM: 20.9
NK_1
46.4
NK_2
45.8
NK_3
45.0
NK_4
41.9
NK_5
41.7
NK_6
41.3
NK_7
41.0
NK_8
39.9
NK_9
39.7
NK_10
39.6
NK_11
38.1
NK_12
38.0
NK_13
37.9
NK_14
37.6
NK_15
37.6
NK_16
37.1
NK_17
36.3
NK_18
36.3
NK_19
36.0
NK_20
35.9
NK_21
35.3
NK_22
35.2
NK_23
35.2
NK_24
35.0
NK_25
34.9
NK_26
34.7
NK_27
34.6
NK_28
34.6
NK_29
34.2
NK_30
33.9
NK_31
33.9
NK_32
33.9
NK_33
33.4
NK_34
32.9
NK_35
32.8
NK_36
32.5
NK_37
32.4
NK_38
32.3
NK_39
32.2
NK_40
32.0
NK_41
31.9
NK_42
31.6
NK_43
31.4
NK_44
31.2
NK_45
31.2
NK_46
31.2
NK_47
31.1
NK_48
30.9
NK_49
30.9
NK_50
30.8
NK_51
30.5
NK_52
30.3
NK_53
30.3
NK_54
29.9
NK_55
29.9
NK_56
29.7
NK_57
29.3
NK_58
29.3
NK_59
29.2
NK_60
29.1
NK_61
28.9
NK_62
28.8
NK_63
28.6
NK_64
28.4
NK_65
28.1
NK_66
27.9
NK_67
27.8
NK_68
27.6
NK_69
27.5
NK_70
27.4
NK_71
27.4
NK_72
27.3
NK_73
26.9
NK_74
26.8
NK_75
26.5
NK_76
26.4
NK_77
26.4
NK_78
26.3
NK_79
26.2
NK_80
26.1
NK_81
26.0
NK_82
25.7
NK_83
25.7
NK_84
25.3
NK_85
25.0
NK_86
24.5
NK_87
23.7
NK_88
22.9
NK_89
22.5
NK_90
20.9
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.