A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.0
nTPM
Monaco:
12.1
nTPM
Schmiedel:
35.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.0
HPA sample
nTPM
Classical monocyte nTPM: 0.5
Samples: 6
Max nTPM: 0.7
Min nTPM: 0.3
P10809_1003
0.3
P10809_1020
0.3
P10809_1039
0.7
P10809_1058
0.6
P10809_1080
0.5
P10809_1107
0.7
Intermediate monocyte nTPM: 0.9
Samples: 6
Max nTPM: 2.6
Min nTPM: 0.1
P10809_1004
0.8
P10809_1023
0.1
P10809_1042
0.4
P10809_1061
2.6
P10809_1081
1.3
P10809_1108
0.3
Non-classical monocyte nTPM: 1.0
Samples: 5
Max nTPM: 1.9
Min nTPM: 0.0
P10809_1005
1.9
P10809_1053
1.2
P10809_1072
0.0
P10809_1082
0.9
P10809_1109
1.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
12.1
Monaco sample
nTPM
Classical monocyte nTPM: 5.4
Samples: 4
Max nTPM: 7.8
Min nTPM: 3.1
RHH5313_R3680
7.8
RHH5221_R3593
3.1
RHH5250_R3622
6.0
RHH5279_R3651
4.6
Intermediate monocyte nTPM: 12.1
Samples: 4
Max nTPM: 20.5
Min nTPM: 5.2
RHH5314_R3681
6.8
RHH5222_R3594
5.2
RHH5251_R3623
20.5
RHH5280_R3652
15.9
Non-classical monocyte nTPM: 10.7
Samples: 4
Max nTPM: 12.5
Min nTPM: 8.7
RHH5315_R3682
8.7
RHH5223_R3595
9.5
RHH5252_R3624
12.5
RHH5281_R3653
12.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
35.0
Schmiedel sample id
TPM
Classical monocyte TPM: 14.1
Samples: 91
Max TPM: 20.2
Min TPM: 7.9
MONOCYTES_1
20.2
MONOCYTES_2
19.3
MONOCYTES_3
19.2
MONOCYTES_4
19.1
MONOCYTES_5
18.4
MONOCYTES_6
18.3
MONOCYTES_7
18.3
MONOCYTES_8
18.2
MONOCYTES_9
17.6
MONOCYTES_10
17.1
MONOCYTES_11
17.0
MONOCYTES_12
17.0
MONOCYTES_13
16.8
MONOCYTES_14
16.8
MONOCYTES_15
16.7
MONOCYTES_16
16.7
MONOCYTES_17
16.6
MONOCYTES_18
16.5
MONOCYTES_19
16.5
MONOCYTES_20
16.5
MONOCYTES_21
16.4
MONOCYTES_22
16.3
MONOCYTES_23
16.1
MONOCYTES_24
16.0
MONOCYTES_25
16.0
MONOCYTES_26
15.8
MONOCYTES_27
15.8
MONOCYTES_28
15.5
MONOCYTES_29
15.5
MONOCYTES_30
15.5
MONOCYTES_31
15.4
MONOCYTES_32
15.1
MONOCYTES_33
15.0
MONOCYTES_34
14.9
MONOCYTES_35
14.7
MONOCYTES_36
14.7
MONOCYTES_37
14.7
MONOCYTES_38
14.5
MONOCYTES_39
14.5
MONOCYTES_40
14.5
MONOCYTES_41
14.3
MONOCYTES_42
14.3
MONOCYTES_43
14.2
MONOCYTES_44
14.1
MONOCYTES_45
14.0
MONOCYTES_46
14.0
MONOCYTES_47
14.0
MONOCYTES_48
14.0
MONOCYTES_49
14.0
MONOCYTES_50
13.9
MONOCYTES_51
13.9
MONOCYTES_52
13.8
MONOCYTES_53
13.8
MONOCYTES_54
13.7
MONOCYTES_55
13.6
MONOCYTES_56
13.6
MONOCYTES_57
13.5
MONOCYTES_58
13.4
MONOCYTES_59
13.4
MONOCYTES_60
13.2
MONOCYTES_61
13.2
MONOCYTES_62
13.2
MONOCYTES_63
13.0
MONOCYTES_64
13.0
MONOCYTES_65
12.6
MONOCYTES_66
12.5
MONOCYTES_67
12.3
MONOCYTES_68
12.3
MONOCYTES_69
12.2
MONOCYTES_70
12.1
MONOCYTES_71
12.0
MONOCYTES_72
11.8
MONOCYTES_73
11.7
MONOCYTES_74
11.6
MONOCYTES_75
11.5
MONOCYTES_76
11.2
MONOCYTES_77
11.2
MONOCYTES_78
11.1
MONOCYTES_79
11.0
MONOCYTES_80
11.0
MONOCYTES_81
11.0
MONOCYTES_82
10.8
MONOCYTES_83
10.8
MONOCYTES_84
10.7
MONOCYTES_85
10.6
MONOCYTES_86
10.4
MONOCYTES_87
10.2
MONOCYTES_88
10.1
MONOCYTES_89
9.8
MONOCYTES_90
8.4
MONOCYTES_91
7.9
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Non-classical monocyte TPM: 35.0
Samples: 90
Max TPM: 69.7
Min TPM: 17.1
M2_1
69.7
M2_2
56.7
M2_3
54.6
M2_4
54.0
M2_5
52.4
M2_6
51.8
M2_7
51.4
M2_8
49.0
M2_9
48.4
M2_10
47.2
M2_11
46.5
M2_12
46.2
M2_13
45.1
M2_14
44.8
M2_15
43.8
M2_16
43.4
M2_17
43.1
M2_18
43.1
M2_19
41.8
M2_20
41.7
M2_21
41.5
M2_22
40.9
M2_23
40.7
M2_24
40.5
M2_25
40.1
M2_26
39.9
M2_27
39.7
M2_28
39.6
M2_29
39.2
M2_30
38.4
M2_31
37.9
M2_32
37.6
M2_33
37.6
M2_34
37.2
M2_35
37.0
M2_36
36.7
M2_37
36.5
M2_38
35.8
M2_39
35.6
M2_40
35.6
M2_41
35.3
M2_42
35.3
M2_43
35.2
M2_44
34.5
M2_45
34.2
M2_46
33.8
M2_47
33.6
M2_48
33.3
M2_49
33.1
M2_50
32.3
M2_51
32.3
M2_52
31.5
M2_53
31.2
M2_54
31.1
M2_55
30.6
M2_56
30.3
M2_57
30.2
M2_58
29.9
M2_59
29.8
M2_60
29.8
M2_61
29.7
M2_62
28.7
M2_63
28.6
M2_64
28.5
M2_65
28.4
M2_66
28.4
M2_67
28.4
M2_68
28.3
M2_69
27.5
M2_70
27.5
M2_71
27.3
M2_72
26.9
M2_73
26.9
M2_74
26.7
M2_75
26.1
M2_76
25.5
M2_77
25.4
M2_78
25.2
M2_79
24.4
M2_80
23.8
M2_81
23.3
M2_82
23.1
M2_83
23.0
M2_84
22.3
M2_85
22.1
M2_86
22.0
M2_87
21.7
M2_88
21.4
M2_89
21.2
M2_90
17.1
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