A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
6.4
nTPM
Monaco:
35.4
nTPM
Schmiedel:
84.0
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
6.4
HPA sample
nTPM
NK-cell nTPM: 6.4
Samples: 6
Max nTPM: 10.6
Min nTPM: 2.5
P10809_1013
4.6
P10809_1033
2.5
P10809_1052
3.6
P10809_1071
8.2
P10809_1093
10.6
P10809_1103
9.1
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
35.4
Monaco sample
nTPM
NK-cell nTPM: 35.4
Samples: 4
Max nTPM: 42.4
Min nTPM: 28.9
RHH5316_R3683
31.7
RHH5224_R3596
38.6
RHH5253_R3625
42.4
RHH5282_R3654
28.9
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
84.0
Schmiedel sample id
TPM
NK-cell TPM: 84.0
Samples: 90
Max TPM: 126.1
Min TPM: 60.4
NK_1
126.1
NK_2
106.0
NK_3
103.0
NK_4
102.4
NK_5
101.8
NK_6
101.6
NK_7
99.8
NK_8
99.8
NK_9
99.7
NK_10
98.8
NK_11
97.0
NK_12
96.0
NK_13
95.8
NK_14
95.0
NK_15
94.8
NK_16
94.4
NK_17
94.2
NK_18
93.2
NK_19
92.2
NK_20
92.1
NK_21
91.6
NK_22
91.6
NK_23
90.5
NK_24
89.2
NK_25
89.1
NK_26
88.9
NK_27
88.4
NK_28
87.5
NK_29
87.1
NK_30
87.0
NK_31
86.1
NK_32
85.7
NK_33
85.5
NK_34
85.2
NK_35
85.1
NK_36
84.9
NK_37
84.3
NK_38
84.3
NK_39
83.9
NK_40
83.9
NK_41
83.6
NK_42
83.5
NK_43
83.3
NK_44
83.2
NK_45
82.6
NK_46
82.4
NK_47
81.6
NK_48
81.2
NK_49
81.0
NK_50
80.4
NK_51
80.4
NK_52
80.1
NK_53
80.0
NK_54
79.9
NK_55
79.9
NK_56
79.7
NK_57
79.7
NK_58
79.7
NK_59
79.7
NK_60
79.6
NK_61
79.4
NK_62
79.3
NK_63
79.2
NK_64
79.0
NK_65
79.0
NK_66
78.9
NK_67
78.7
NK_68
78.6
NK_69
77.9
NK_70
76.9
NK_71
76.9
NK_72
76.8
NK_73
76.7
NK_74
76.5
NK_75
76.4
NK_76
76.3
NK_77
76.1
NK_78
75.7
NK_79
75.6
NK_80
74.8
NK_81
74.4
NK_82
72.8
NK_83
69.3
NK_84
68.9
NK_85
68.4
NK_86
66.3
NK_87
66.3
NK_88
62.0
NK_89
60.8
NK_90
60.4
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