A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
3.8
nTPM
Monaco:
35.3
nTPM
Schmiedel:
94.4
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
3.8
HPA sample
nTPM
Classical monocyte nTPM: 2.8
Samples: 6
Max nTPM: 3.9
Min nTPM: 2.1
P10809_1003
3.9
P10809_1020
2.2
P10809_1039
2.1
P10809_1058
3.0
P10809_1080
3.5
P10809_1107
2.3
Intermediate monocyte nTPM: 3.8
Samples: 6
Max nTPM: 9.6
Min nTPM: 0.1
P10809_1004
3.3
P10809_1023
9.6
P10809_1042
4.1
P10809_1061
0.1
P10809_1081
2.4
P10809_1108
3.0
Non-classical monocyte nTPM: 3.4
Samples: 5
Max nTPM: 5.1
Min nTPM: 0.0
P10809_1005
5.1
P10809_1053
4.2
P10809_1072
0.0
P10809_1082
2.5
P10809_1109
5.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
35.3
Monaco sample
nTPM
Classical monocyte nTPM: 35.3
Samples: 4
Max nTPM: 44.5
Min nTPM: 23.1
RHH5313_R3680
31.1
RHH5221_R3593
42.5
RHH5250_R3622
44.5
RHH5279_R3651
23.1
Intermediate monocyte nTPM: 26.7
Samples: 4
Max nTPM: 37.2
Min nTPM: 14.6
RHH5314_R3681
23.0
RHH5222_R3594
37.2
RHH5251_R3623
31.8
RHH5280_R3652
14.6
Non-classical monocyte nTPM: 27.4
Samples: 4
Max nTPM: 35.1
Min nTPM: 16.0
RHH5315_R3682
29.1
RHH5223_R3595
35.1
RHH5252_R3624
29.5
RHH5281_R3653
16.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
94.4
Schmiedel sample id
TPM
Classical monocyte TPM: 94.4
Samples: 91
Max TPM: 170.7
Min TPM: 72.6
MONOCYTES_1
170.7
MONOCYTES_2
116.5
MONOCYTES_3
114.8
MONOCYTES_4
114.6
MONOCYTES_5
113.9
MONOCYTES_6
113.8
MONOCYTES_7
112.8
MONOCYTES_8
110.4
MONOCYTES_9
110.0
MONOCYTES_10
108.3
MONOCYTES_11
107.6
MONOCYTES_12
106.2
MONOCYTES_13
106.0
MONOCYTES_14
105.5
MONOCYTES_15
105.5
MONOCYTES_16
105.3
MONOCYTES_17
105.2
MONOCYTES_18
105.1
MONOCYTES_19
105.1
MONOCYTES_20
103.9
MONOCYTES_21
103.5
MONOCYTES_22
102.8
MONOCYTES_23
102.6
MONOCYTES_24
102.2
MONOCYTES_25
101.8
MONOCYTES_26
100.9
MONOCYTES_27
100.8
MONOCYTES_28
100.7
MONOCYTES_29
100.6
MONOCYTES_30
100.5
MONOCYTES_31
100.3
MONOCYTES_32
100.3
MONOCYTES_33
100.2
MONOCYTES_34
99.2
MONOCYTES_35
98.2
MONOCYTES_36
97.9
MONOCYTES_37
97.3
MONOCYTES_38
97.1
MONOCYTES_39
96.2
MONOCYTES_40
95.6
MONOCYTES_41
94.8
MONOCYTES_42
94.0
MONOCYTES_43
93.0
MONOCYTES_44
92.9
MONOCYTES_45
92.9
MONOCYTES_46
92.8
MONOCYTES_47
92.7
MONOCYTES_48
92.3
MONOCYTES_49
92.2
MONOCYTES_50
92.0
MONOCYTES_51
92.0
MONOCYTES_52
91.8
MONOCYTES_53
91.4
MONOCYTES_54
91.1
MONOCYTES_55
90.3
MONOCYTES_56
89.1
MONOCYTES_57
88.2
MONOCYTES_58
88.1
MONOCYTES_59
88.0
MONOCYTES_60
87.0
MONOCYTES_61
86.8
MONOCYTES_62
86.5
MONOCYTES_63
85.7
MONOCYTES_64
85.2
MONOCYTES_65
85.1
MONOCYTES_66
85.0
MONOCYTES_67
84.6
MONOCYTES_68
84.3
MONOCYTES_69
84.3
MONOCYTES_70
83.8
MONOCYTES_71
83.5
MONOCYTES_72
83.4
MONOCYTES_73
83.3
MONOCYTES_74
83.1
MONOCYTES_75
82.7
MONOCYTES_76
82.6
MONOCYTES_77
82.5
MONOCYTES_78
82.4
MONOCYTES_79
82.1
MONOCYTES_80
81.8
MONOCYTES_81
81.1
MONOCYTES_82
80.5
MONOCYTES_83
80.5
MONOCYTES_84
78.8
MONOCYTES_85
76.6
MONOCYTES_86
76.5
MONOCYTES_87
76.3
MONOCYTES_88
76.1
MONOCYTES_89
74.1
MONOCYTES_90
73.6
MONOCYTES_91
72.6
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Non-classical monocyte TPM: 50.5
Samples: 90
Max TPM: 80.9
Min TPM: 36.8
M2_1
80.9
M2_2
68.8
M2_3
66.2
M2_4
65.1
M2_5
62.4
M2_6
62.3
M2_7
61.1
M2_8
60.9
M2_9
59.8
M2_10
57.9
M2_11
57.8
M2_12
57.3
M2_13
57.0
M2_14
56.5
M2_15
55.8
M2_16
55.7
M2_17
55.4
M2_18
54.6
M2_19
54.5
M2_20
54.4
M2_21
54.3
M2_22
54.3
M2_23
54.2
M2_24
54.1
M2_25
54.0
M2_26
54.0
M2_27
54.0
M2_28
53.9
M2_29
53.7
M2_30
53.4
M2_31
53.2
M2_32
53.2
M2_33
53.1
M2_34
52.8
M2_35
52.7
M2_36
52.6
M2_37
52.6
M2_38
52.5
M2_39
52.4
M2_40
51.9
M2_41
51.7
M2_42
50.6
M2_43
50.3
M2_44
50.2
M2_45
50.2
M2_46
50.1
M2_47
49.9
M2_48
49.8
M2_49
49.7
M2_50
49.6
M2_51
49.3
M2_52
49.2
M2_53
49.2
M2_54
49.2
M2_55
49.0
M2_56
48.2
M2_57
47.8
M2_58
47.6
M2_59
46.9
M2_60
46.9
M2_61
46.5
M2_62
46.5
M2_63
46.3
M2_64
46.1
M2_65
46.0
M2_66
46.0
M2_67
45.3
M2_68
45.1
M2_69
45.1
M2_70
45.0
M2_71
44.7
M2_72
44.6
M2_73
44.5
M2_74
44.4
M2_75
44.2
M2_76
44.1
M2_77
43.6
M2_78
42.6
M2_79
42.2
M2_80
42.1
M2_81
42.0
M2_82
41.8
M2_83
41.7
M2_84
41.2
M2_85
40.6
M2_86
38.8
M2_87
38.7
M2_88
37.9
M2_89
37.7
M2_90
36.8
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