A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
22.9
nTPM
Monaco:
45.7
nTPM
Schmiedel:
37.2
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
22.9
HPA sample
nTPM
NK-cell nTPM: 22.9
Samples: 6
Max nTPM: 39.9
Min nTPM: 7.4
P10809_1013
13.9
P10809_1033
39.9
P10809_1052
30.3
P10809_1071
24.6
P10809_1093
7.4
P10809_1103
21.1
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
45.7
Monaco sample
nTPM
NK-cell nTPM: 45.7
Samples: 4
Max nTPM: 56.6
Min nTPM: 28.7
RHH5316_R3683
44.2
RHH5224_R3596
53.3
RHH5253_R3625
56.6
RHH5282_R3654
28.7
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
37.2
Schmiedel sample id
TPM
NK-cell TPM: 37.2
Samples: 90
Max TPM: 47.2
Min TPM: 22.8
NK_1
47.2
NK_2
46.7
NK_3
45.7
NK_4
45.2
NK_5
44.8
NK_6
44.4
NK_7
44.1
NK_8
43.7
NK_9
43.1
NK_10
43.0
NK_11
42.4
NK_12
42.0
NK_13
41.9
NK_14
41.9
NK_15
41.6
NK_16
41.4
NK_17
41.4
NK_18
41.4
NK_19
41.3
NK_20
40.8
NK_21
40.6
NK_22
40.5
NK_23
40.4
NK_24
40.1
NK_25
40.1
NK_26
40.0
NK_27
39.9
NK_28
39.8
NK_29
39.7
NK_30
39.7
NK_31
39.7
NK_32
39.0
NK_33
39.0
NK_34
39.0
NK_35
39.0
NK_36
38.7
NK_37
38.7
NK_38
38.5
NK_39
38.4
NK_40
38.4
NK_41
37.7
NK_42
37.6
NK_43
37.3
NK_44
37.1
NK_45
36.9
NK_46
36.9
NK_47
36.5
NK_48
36.5
NK_49
36.5
NK_50
36.5
NK_51
36.4
NK_52
36.2
NK_53
36.1
NK_54
36.0
NK_55
35.9
NK_56
35.7
NK_57
35.5
NK_58
35.4
NK_59
35.3
NK_60
35.3
NK_61
35.2
NK_62
35.0
NK_63
34.8
NK_64
34.8
NK_65
34.4
NK_66
34.2
NK_67
34.2
NK_68
34.1
NK_69
34.0
NK_70
33.9
NK_71
33.7
NK_72
33.7
NK_73
33.5
NK_74
33.2
NK_75
33.1
NK_76
33.1
NK_77
33.0
NK_78
32.8
NK_79
32.6
NK_80
32.5
NK_81
32.4
NK_82
31.3
NK_83
30.9
NK_84
30.6
NK_85
30.0
NK_86
29.7
NK_87
27.1
NK_88
26.8
NK_89
26.6
NK_90
22.8
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