A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
24.0
nTPM
Monaco:
49.9
nTPM
Schmiedel:
25.4
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
24.0
HPA sample
nTPM
Classical monocyte nTPM: 17.7
Samples: 6
Max nTPM: 25.6
Min nTPM: 14.3
P10809_1003
14.4
P10809_1020
25.6
P10809_1039
20.8
P10809_1058
14.3
P10809_1080
14.4
P10809_1107
16.8
Intermediate monocyte nTPM: 24.0
Samples: 6
Max nTPM: 32.4
Min nTPM: 15.2
P10809_1004
16.6
P10809_1023
25.6
P10809_1042
32.4
P10809_1061
31.9
P10809_1081
15.2
P10809_1108
22.3
Non-classical monocyte nTPM: 19.4
Samples: 5
Max nTPM: 29.7
Min nTPM: 12.7
P10809_1005
18.7
P10809_1053
29.7
P10809_1072
12.7
P10809_1082
13.3
P10809_1109
22.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
49.9
Monaco sample
nTPM
Classical monocyte nTPM: 37.1
Samples: 4
Max nTPM: 44.9
Min nTPM: 30.6
RHH5313_R3680
44.9
RHH5221_R3593
40.7
RHH5250_R3622
32.0
RHH5279_R3651
30.6
Intermediate monocyte nTPM: 41.1
Samples: 4
Max nTPM: 46.8
Min nTPM: 34.1
RHH5314_R3681
46.8
RHH5222_R3594
42.6
RHH5251_R3623
34.1
RHH5280_R3652
40.9
Non-classical monocyte nTPM: 50.0
Samples: 4
Max nTPM: 57.4
Min nTPM: 45.5
RHH5315_R3682
57.4
RHH5223_R3595
49.7
RHH5252_R3624
45.5
RHH5281_R3653
47.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
25.4
Schmiedel sample id
TPM
Classical monocyte TPM: 17.6
Samples: 91
Max TPM: 22.9
Min TPM: 13.3
MONOCYTES_1
22.9
MONOCYTES_2
21.0
MONOCYTES_3
20.9
MONOCYTES_4
20.8
MONOCYTES_5
20.4
MONOCYTES_6
20.3
MONOCYTES_7
20.0
MONOCYTES_8
20.0
MONOCYTES_9
19.7
MONOCYTES_10
19.7
MONOCYTES_11
19.4
MONOCYTES_12
19.3
MONOCYTES_13
19.3
MONOCYTES_14
19.2
MONOCYTES_15
19.2
MONOCYTES_16
19.1
MONOCYTES_17
19.1
MONOCYTES_18
19.1
MONOCYTES_19
19.0
MONOCYTES_20
19.0
MONOCYTES_21
19.0
MONOCYTES_22
18.9
MONOCYTES_23
18.9
MONOCYTES_24
18.8
MONOCYTES_25
18.8
MONOCYTES_26
18.8
MONOCYTES_27
18.7
MONOCYTES_28
18.6
MONOCYTES_29
18.6
MONOCYTES_30
18.6
MONOCYTES_31
18.4
MONOCYTES_32
18.3
MONOCYTES_33
18.1
MONOCYTES_34
18.1
MONOCYTES_35
18.1
MONOCYTES_36
18.1
MONOCYTES_37
18.0
MONOCYTES_38
18.0
MONOCYTES_39
17.9
MONOCYTES_40
17.9
MONOCYTES_41
17.9
MONOCYTES_42
17.8
MONOCYTES_43
17.7
MONOCYTES_44
17.7
MONOCYTES_45
17.6
MONOCYTES_46
17.6
MONOCYTES_47
17.5
MONOCYTES_48
17.5
MONOCYTES_49
17.5
MONOCYTES_50
17.4
MONOCYTES_51
17.3
MONOCYTES_52
17.3
MONOCYTES_53
17.2
MONOCYTES_54
17.2
MONOCYTES_55
17.2
MONOCYTES_56
17.1
MONOCYTES_57
17.0
MONOCYTES_58
17.0
MONOCYTES_59
16.9
MONOCYTES_60
16.8
MONOCYTES_61
16.8
MONOCYTES_62
16.7
MONOCYTES_63
16.6
MONOCYTES_64
16.6
MONOCYTES_65
16.5
MONOCYTES_66
16.5
MONOCYTES_67
16.4
MONOCYTES_68
16.4
MONOCYTES_69
16.4
MONOCYTES_70
16.3
MONOCYTES_71
16.2
MONOCYTES_72
16.2
MONOCYTES_73
16.1
MONOCYTES_74
16.1
MONOCYTES_75
16.0
MONOCYTES_76
15.9
MONOCYTES_77
15.9
MONOCYTES_78
15.9
MONOCYTES_79
15.8
MONOCYTES_80
15.7
MONOCYTES_81
15.6
MONOCYTES_82
15.4
MONOCYTES_83
15.3
MONOCYTES_84
15.2
MONOCYTES_85
15.1
MONOCYTES_86
15.0
MONOCYTES_87
14.3
MONOCYTES_88
14.3
MONOCYTES_89
14.0
MONOCYTES_90
13.7
MONOCYTES_91
13.3
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Non-classical monocyte TPM: 25.4
Samples: 90
Max TPM: 31.9
Min TPM: 16.4
M2_1
31.9
M2_2
30.5
M2_3
30.3
M2_4
30.3
M2_5
30.3
M2_6
30.1
M2_7
29.5
M2_8
29.1
M2_9
29.0
M2_10
28.6
M2_11
28.5
M2_12
28.3
M2_13
28.0
M2_14
28.0
M2_15
27.9
M2_16
27.9
M2_17
27.9
M2_18
27.9
M2_19
27.9
M2_20
27.8
M2_21
27.7
M2_22
27.7
M2_23
27.5
M2_24
27.5
M2_25
27.5
M2_26
27.3
M2_27
27.3
M2_28
27.3
M2_29
27.3
M2_30
27.2
M2_31
27.0
M2_32
27.0
M2_33
26.9
M2_34
26.8
M2_35
26.6
M2_36
26.6
M2_37
26.6
M2_38
26.5
M2_39
26.2
M2_40
26.2
M2_41
26.0
M2_42
25.9
M2_43
25.9
M2_44
25.9
M2_45
25.8
M2_46
25.7
M2_47
25.7
M2_48
25.4
M2_49
25.3
M2_50
25.3
M2_51
25.3
M2_52
25.3
M2_53
25.2
M2_54
25.2
M2_55
25.1
M2_56
25.1
M2_57
24.7
M2_58
24.7
M2_59
24.7
M2_60
24.6
M2_61
24.4
M2_62
24.3
M2_63
24.1
M2_64
24.1
M2_65
23.9
M2_66
23.9
M2_67
23.8
M2_68
23.3
M2_69
23.3
M2_70
23.1
M2_71
23.1
M2_72
23.0
M2_73
22.9
M2_74
22.5
M2_75
22.2
M2_76
22.1
M2_77
22.1
M2_78
21.9
M2_79
21.9
M2_80
21.7
M2_81
21.6
M2_82
21.3
M2_83
20.9
M2_84
20.7
M2_85
20.7
M2_86
20.1
M2_87
19.9
M2_88
19.8
M2_89
18.1
M2_90
16.4
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