MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:27.1 nTPM
HPA Brain:98.9 nTPM
GTEx:27.1 nTPM
FANTOM5:63.4 Scaled Tags Per Million
Pig:122.0 nTPM
Mouse:60.8 nTPM
Allen mouse:3.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 98.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 67.3
2411 Female, age 72, unknown 92.3
1870 Female, age 42, unknown 89.1
1830 Male, age 51, unknown 70.2
1833 Male, age 53, unknown 69.8
1827 Male, age 72, unknown 69.3
2828 Female, age 72, unknown 67.2
2019 Male, age 18, unknown 65.0
2219 Male, age 76, both hemispheres 53.9
2666 Male, age 74, left hemisphere 48.9
2586 Male, age 75, left hemisphere 47.2
Dorsal raphe nucleus
nTPM: 81.4
2750 Male, age 76, both hemispheres 100.1
2298 Female, age 72, unknown 96.8
2047 Male, age 72, unknown 82.6
1828 Male, age 53, unknown 70.3
2016 Female, age 72, unknown 57.2
Inferior colliculus
nTPM: 63.8
2097 Female, age 72, unknown 74.8
1848 Female, age 42, unknown 68.2
1890 Male, age 53, unknown 57.8
2849 Male, age 72, unknown 54.3
Median raphe nucleus
nTPM: 98.9
2220 Male, age 76, midline 98.9
Periaquaductal grey, anterior
nTPM: 76.8
2502 Female, age 75, unknown 90.2
1947 Male, age 18, unknown 81.2
1795 Male, age 51, unknown 59.0
Periaquaductal grey, dorsal
nTPM: 61.3
2850 Male, age 76, both hemispheres 69.8
2464 Female, age 72, unknown 69.2
1840 Male, age 53, unknown 53.2
1831 Male, age 72, unknown 53.0
Periaquaductal grey, lateral
nTPM: 65.5
2053 Male, age 18, unknown 68.5
2272 Male, age 74, both hemispheres 65.1
2140 Male, age 76, both hemispheres 63.0
Pretectal area
nTPM: 67.6
2224 Female, age 72, unknown 79.0
2273 Male, age 74, both hemispheres 78.3
2667 Female, age 75, unknown 74.2
1815 Male, age 53, unknown 71.6
1817 Female, age 42, unknown 71.2
2007 Male, age 72, unknown 71.0
2825 Male, age 18, unknown 68.2
1816 Male, age 51, unknown 63.8
1944 Female, age 72, unknown 60.3
2316 Male, age 76, right hemisphere 59.7
2407 Male, age 75, both hemispheres 46.7
Red nucleus
nTPM: 65.2
1821 Female, age 72, unknown 87.8
1865 Male, age 51, unknown 87.7
1904 Male, age 53, unknown 70.6
1954 Female, age 42, unknown 70.3
2227 Male, age 72, unknown 65.0
2503 Female, age 72, unknown 64.4
2769 Male, age 72, unknown 64.1
2785 Male, age 18, unknown 64.1
2725 Female, age 75, unknown 63.1
2823 Male, age 76, right hemisphere 55.0
2588 Male, age 74, left hemisphere 50.0
2584 Male, age 75, left hemisphere 40.0
Substantia nigra
nTPM: 51.4
1916 Female, age 42, unknown 71.1
1889 Female, age 72, unknown 67.6
1941 Male, age 53, unknown 66.9
2241 Male, age 72, unknown 66.8
1851 Male, age 51, unknown 50.7
2699 Male, age 18, unknown 39.3
2409 Female, age 72, unknown 38.9
2590 Female, age 75, unknown 37.8
2665 Male, age 74, both hemispheres 37.5
2583 Male, age 75, right hemisphere 36.9
Superior colliculus
nTPM: 65.1
2587 Male, age 74, left hemisphere 81.7
2261 Male, age 18, unknown 71.6
1839 Male, age 51, unknown 69.2
1895 Male, age 76, right hemisphere 68.7
2668 Female, age 75, unknown 64.6
1913 Female, age 42, unknown 64.3
2087 Female, age 72, unknown 62.7
1796 Male, age 53, unknown 58.9
2664 Male, age 75, both hemispheres 55.6
1995 Male, age 72, unknown 54.1
Ventral tegmental area
nTPM: 69.0
2223 Female, age 72, unknown 89.1
2410 Female, age 72, unknown 73.9
2218 Male, age 76, both hemispheres 68.8
2021 Male, age 53, unknown 62.8
1915 Female, age 42, unknown 62.2
1942 Male, age 51, unknown 57.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 27.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 27.1
Samples: 183

Max nTPM: 57.8
Min nTPM: 10.8
Std nTPM: 9.4
Median nTPM: 25.4
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 57.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 57.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 54.4
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 52.6
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 51.9
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 50.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 48.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 45.4
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 45.2
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 44.7
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 44.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 63.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 63.4
FF:10158-103A5 76 years, female 63.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 122.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 107.4
Samples: 4

Max nTPM: 140.4
Min nTPM: 83.3
Sample A Female 140.4
Sample B Female 83.3
Sample C Male 117.6
Sample D Male 88.1
Midbrain
nTPM: 122.1
Samples: 4

Max nTPM: 203.9
Min nTPM: 89.2
Sample A Female 203.9
Sample B Female 101.6
Sample C Male 93.5
Sample D Male 89.2
Periaqueductal gray
nTPM: 92.4
Samples: 3

Max nTPM: 102.6
Min nTPM: 85.3
Sample B Female 89.4
Sample C Male 102.6
Sample D Male 85.3
Superior colliculi
nTPM: 93.7
Samples: 4

Max nTPM: 99.4
Min nTPM: 85.7
Sample A Female 99.4
Sample B Female 85.7
Sample C Male 94.3
Sample D Male 95.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 60.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 60.9
Samples: 4

Max nTPM: 63.5
Min nTPM: 59.3
Sample A Male 60.0
Sample B Male 63.5
Sample C Female 59.3
Sample D Female 60.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.5
75934914 Antisense, RP_060530_01_E06, Mouse strain C57BL/6J (56 days, male) 7.5
68632208 Antisense, RP_050125_01_H08, Mouse strain C57BL/6J (56 days, male) 2.9
70919639 Antisense, RP_050713_01_G04, Mouse strain C57BL/6J (56 days, male) 0.2

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