A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
32.8
nTPM
Monaco:
396.0
nTPM
Schmiedel:
26.8
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
32.8
HPA sample
nTPM
Memory B-cell nTPM: 32.8
Samples: 6
Max nTPM: 42.5
Min nTPM: 23.1
P10809_1017
39.8
P10809_1025
42.5
P10809_1044
29.8
P10809_1063
23.1
P10809_1092
31.8
P10809_1105
29.8
Naive B-cell nTPM: 23.6
Samples: 6
Max nTPM: 38.0
Min nTPM: 17.4
P10809_1011
18.3
P10809_1029
19.4
P10809_1048
38.0
P10809_1067
17.4
P10809_1091
24.1
P10809_1104
24.4
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
396.0
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 119.4
Samples: 4
Max nTPM: 232.4
Min nTPM: 61.7
RHH5310_R3677
119.8
RHH5218_R3590
232.4
RHH5247_R3619
63.8
RHH5276_R3648
61.7
Naive B-cell nTPM: 109.1
Samples: 4
Max nTPM: 282.6
Min nTPM: 26.5
RHH5308_R3675
63.1
RHH5216_R3588
282.6
RHH5245_R3617
26.5
RHH5274_R3646
64.1
Non-switched memory B-cell nTPM: 95.3
Samples: 4
Max nTPM: 184.8
Min nTPM: 58.3
RHH5309_R3676
70.8
RHH5217_R3589
184.8
RHH5246_R3618
58.3
RHH5275_R3647
67.1
Plasmablast nTPM: 396.0
Samples: 4
Max nTPM: 640.0
Min nTPM: 212.5
RHH5312_R3679
386.9
RHH5220_R3592
640.0
RHH5249_R3621
212.5
RHH5278_R3650
344.7
Switched memory B-cell nTPM: 104.5
Samples: 4
Max nTPM: 214.7
Min nTPM: 58.2
RHH5311_R3678
76.0
RHH5219_R3591
214.7
RHH5248_R3620
58.2
RHH5277_R3649
69.0
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
26.8
Schmiedel sample id
TPM
Naive B-cell TPM: 26.8
Samples: 91
Max TPM: 45.3
Min TPM: 19.0
B_CELL_NAIVE_1
45.3
B_CELL_NAIVE_2
43.8
B_CELL_NAIVE_3
43.7
B_CELL_NAIVE_4
37.3
B_CELL_NAIVE_5
36.6
B_CELL_NAIVE_6
35.0
B_CELL_NAIVE_7
34.4
B_CELL_NAIVE_8
33.8
B_CELL_NAIVE_9
32.7
B_CELL_NAIVE_10
32.2
B_CELL_NAIVE_11
32.0
B_CELL_NAIVE_12
31.7
B_CELL_NAIVE_13
30.9
B_CELL_NAIVE_14
30.4
B_CELL_NAIVE_15
30.3
B_CELL_NAIVE_16
30.3
B_CELL_NAIVE_17
30.2
B_CELL_NAIVE_18
29.7
B_CELL_NAIVE_19
29.7
B_CELL_NAIVE_20
29.5
B_CELL_NAIVE_21
29.2
B_CELL_NAIVE_22
28.9
B_CELL_NAIVE_23
28.6
B_CELL_NAIVE_24
28.6
B_CELL_NAIVE_25
28.1
B_CELL_NAIVE_26
28.1
B_CELL_NAIVE_27
28.0
B_CELL_NAIVE_28
27.9
B_CELL_NAIVE_29
27.8
B_CELL_NAIVE_30
27.8
B_CELL_NAIVE_31
27.7
B_CELL_NAIVE_32
27.2
B_CELL_NAIVE_33
27.2
B_CELL_NAIVE_34
27.2
B_CELL_NAIVE_35
27.1
B_CELL_NAIVE_36
26.9
B_CELL_NAIVE_37
26.9
B_CELL_NAIVE_38
26.8
B_CELL_NAIVE_39
26.8
B_CELL_NAIVE_40
26.5
B_CELL_NAIVE_41
26.4
B_CELL_NAIVE_42
26.4
B_CELL_NAIVE_43
26.3
B_CELL_NAIVE_44
26.3
B_CELL_NAIVE_45
26.2
B_CELL_NAIVE_46
26.2
B_CELL_NAIVE_47
26.1
B_CELL_NAIVE_48
25.8
B_CELL_NAIVE_49
25.5
B_CELL_NAIVE_50
25.3
B_CELL_NAIVE_51
25.2
B_CELL_NAIVE_52
25.2
B_CELL_NAIVE_53
25.0
B_CELL_NAIVE_54
24.8
B_CELL_NAIVE_55
24.8
B_CELL_NAIVE_56
24.6
B_CELL_NAIVE_57
24.6
B_CELL_NAIVE_58
24.6
B_CELL_NAIVE_59
24.5
B_CELL_NAIVE_60
24.5
B_CELL_NAIVE_61
24.4
B_CELL_NAIVE_62
24.4
B_CELL_NAIVE_63
24.2
B_CELL_NAIVE_64
23.9
B_CELL_NAIVE_65
23.7
B_CELL_NAIVE_66
23.6
B_CELL_NAIVE_67
23.5
B_CELL_NAIVE_68
23.2
B_CELL_NAIVE_69
23.1
B_CELL_NAIVE_70
23.0
B_CELL_NAIVE_71
22.9
B_CELL_NAIVE_72
22.9
B_CELL_NAIVE_73
22.8
B_CELL_NAIVE_74
22.8
B_CELL_NAIVE_75
22.7
B_CELL_NAIVE_76
22.7
B_CELL_NAIVE_77
22.6
B_CELL_NAIVE_78
22.4
B_CELL_NAIVE_79
22.3
B_CELL_NAIVE_80
22.2
B_CELL_NAIVE_81
22.2
B_CELL_NAIVE_82
22.0
B_CELL_NAIVE_83
22.0
B_CELL_NAIVE_84
21.9
B_CELL_NAIVE_85
21.8
B_CELL_NAIVE_86
21.5
B_CELL_NAIVE_87
21.4
B_CELL_NAIVE_88
21.2
B_CELL_NAIVE_89
20.7
B_CELL_NAIVE_90
19.3
B_CELL_NAIVE_91
19.0
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