A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
210.1
nTPM
Monaco:
635.9
nTPM
Schmiedel:
125.9
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
210.1
HPA sample
nTPM
Classical monocyte nTPM: 200.8
Samples: 6
Max nTPM: 286.2
Min nTPM: 119.3
P10809_1003
286.2
P10809_1020
196.0
P10809_1039
222.2
P10809_1058
119.3
P10809_1080
189.1
P10809_1107
191.8
Intermediate monocyte nTPM: 210.0
Samples: 6
Max nTPM: 242.5
Min nTPM: 160.8
P10809_1004
189.9
P10809_1023
213.8
P10809_1042
217.4
P10809_1061
242.5
P10809_1081
160.8
P10809_1108
235.8
Non-classical monocyte nTPM: 158.8
Samples: 5
Max nTPM: 268.5
Min nTPM: 55.5
P10809_1005
148.9
P10809_1053
152.2
P10809_1072
268.5
P10809_1082
55.5
P10809_1109
169.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
635.9
Monaco sample
nTPM
Classical monocyte nTPM: 635.9
Samples: 4
Max nTPM: 1586.5
Min nTPM: 273.9
RHH5313_R3680
331.6
RHH5221_R3593
1586.5
RHH5250_R3622
273.9
RHH5279_R3651
351.7
Intermediate monocyte nTPM: 443.3
Samples: 4
Max nTPM: 876.5
Min nTPM: 183.5
RHH5314_R3681
306.2
RHH5222_R3594
876.5
RHH5251_R3623
183.5
RHH5280_R3652
406.9
Non-classical monocyte nTPM: 329.0
Samples: 4
Max nTPM: 689.8
Min nTPM: 163.8
RHH5315_R3682
210.7
RHH5223_R3595
689.8
RHH5252_R3624
163.8
RHH5281_R3653
251.8
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
125.9
Schmiedel sample id
TPM
Classical monocyte TPM: 125.9
Samples: 91
Max TPM: 375.6
Min TPM: 48.3
MONOCYTES_1
375.6
MONOCYTES_2
265.2
MONOCYTES_3
245.3
MONOCYTES_4
236.0
MONOCYTES_5
231.1
MONOCYTES_6
218.2
MONOCYTES_7
200.1
MONOCYTES_8
196.6
MONOCYTES_9
194.2
MONOCYTES_10
185.9
MONOCYTES_11
180.8
MONOCYTES_12
178.2
MONOCYTES_13
176.4
MONOCYTES_14
175.0
MONOCYTES_15
168.0
MONOCYTES_16
158.8
MONOCYTES_17
158.2
MONOCYTES_18
157.2
MONOCYTES_19
156.8
MONOCYTES_20
151.6
MONOCYTES_21
151.2
MONOCYTES_22
149.2
MONOCYTES_23
146.5
MONOCYTES_24
146.5
MONOCYTES_25
146.5
MONOCYTES_26
144.5
MONOCYTES_27
141.3
MONOCYTES_28
140.8
MONOCYTES_29
140.1
MONOCYTES_30
139.5
MONOCYTES_31
139.1
MONOCYTES_32
138.5
MONOCYTES_33
134.9
MONOCYTES_34
134.2
MONOCYTES_35
131.4
MONOCYTES_36
130.4
MONOCYTES_37
127.9
MONOCYTES_38
126.9
MONOCYTES_39
124.9
MONOCYTES_40
120.7
MONOCYTES_41
120.6
MONOCYTES_42
119.4
MONOCYTES_43
118.4
MONOCYTES_44
118.0
MONOCYTES_45
117.1
MONOCYTES_46
116.6
MONOCYTES_47
116.2
MONOCYTES_48
114.1
MONOCYTES_49
110.3
MONOCYTES_50
108.9
MONOCYTES_51
108.2
MONOCYTES_52
108.1
MONOCYTES_53
108.0
MONOCYTES_54
105.6
MONOCYTES_55
105.3
MONOCYTES_56
102.8
MONOCYTES_57
101.9
MONOCYTES_58
100.1
MONOCYTES_59
99.2
MONOCYTES_60
99.0
MONOCYTES_61
96.1
MONOCYTES_62
96.0
MONOCYTES_63
96.0
MONOCYTES_64
94.2
MONOCYTES_65
91.0
MONOCYTES_66
90.6
MONOCYTES_67
89.5
MONOCYTES_68
88.9
MONOCYTES_69
86.3
MONOCYTES_70
85.0
MONOCYTES_71
84.9
MONOCYTES_72
83.5
MONOCYTES_73
83.2
MONOCYTES_74
81.4
MONOCYTES_75
80.6
MONOCYTES_76
80.4
MONOCYTES_77
79.0
MONOCYTES_78
78.9
MONOCYTES_79
77.8
MONOCYTES_80
77.6
MONOCYTES_81
76.1
MONOCYTES_82
75.5
MONOCYTES_83
75.4
MONOCYTES_84
75.0
MONOCYTES_85
74.7
MONOCYTES_86
74.7
MONOCYTES_87
74.1
MONOCYTES_88
70.5
MONOCYTES_89
68.8
MONOCYTES_90
60.1
MONOCYTES_91
48.3
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Non-classical monocyte TPM: 105.6
Samples: 90
Max TPM: 211.4
Min TPM: 57.7
M2_1
211.4
M2_2
204.0
M2_3
194.3
M2_4
192.3
M2_5
182.5
M2_6
179.1
M2_7
170.4
M2_8
166.9
M2_9
164.8
M2_10
159.7
M2_11
149.8
M2_12
148.9
M2_13
147.2
M2_14
145.0
M2_15
142.6
M2_16
141.5
M2_17
141.5
M2_18
140.1
M2_19
137.9
M2_20
136.3
M2_21
134.9
M2_22
132.8
M2_23
129.2
M2_24
129.2
M2_25
129.0
M2_26
123.0
M2_27
122.9
M2_28
122.5
M2_29
120.3
M2_30
117.2
M2_31
115.0
M2_32
112.4
M2_33
110.4
M2_34
109.9
M2_35
107.9
M2_36
106.1
M2_37
103.7
M2_38
103.0
M2_39
101.1
M2_40
100.3
M2_41
97.1
M2_42
97.1
M2_43
97.0
M2_44
95.6
M2_45
94.4
M2_46
92.6
M2_47
92.5
M2_48
92.3
M2_49
88.5
M2_50
88.3
M2_51
86.0
M2_52
85.4
M2_53
83.4
M2_54
82.8
M2_55
81.0
M2_56
80.7
M2_57
80.6
M2_58
80.1
M2_59
79.9
M2_60
79.2
M2_61
79.0
M2_62
79.0
M2_63
78.7
M2_64
78.4
M2_65
78.0
M2_66
77.2
M2_67
76.9
M2_68
76.4
M2_69
76.3
M2_70
76.0
M2_71
75.9
M2_72
75.2
M2_73
75.0
M2_74
74.5
M2_75
74.3
M2_76
73.8
M2_77
73.7
M2_78
72.4
M2_79
71.8
M2_80
71.6
M2_81
71.1
M2_82
71.0
M2_83
70.9
M2_84
68.9
M2_85
67.1
M2_86
64.2
M2_87
60.6
M2_88
60.6
M2_89
59.8
M2_90
57.7
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