A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
25.8
nTPM
Monaco:
433.1
nTPM
Schmiedel:
40.1
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
25.8
HPA sample
nTPM
Memory B-cell nTPM: 25.8
Samples: 6
Max nTPM: 30.3
Min nTPM: 19.9
P10809_1017
28.0
P10809_1025
30.3
P10809_1044
19.9
P10809_1063
22.8
P10809_1092
27.7
P10809_1105
25.8
Naive B-cell nTPM: 20.9
Samples: 6
Max nTPM: 42.5
Min nTPM: 12.6
P10809_1011
12.6
P10809_1029
16.2
P10809_1048
42.5
P10809_1067
23.0
P10809_1091
16.2
P10809_1104
15.1
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
433.1
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 160.7
Samples: 4
Max nTPM: 216.9
Min nTPM: 108.2
RHH5310_R3677
189.5
RHH5218_R3590
216.9
RHH5247_R3619
108.2
RHH5276_R3648
128.2
Naive B-cell nTPM: 121.8
Samples: 4
Max nTPM: 182.1
Min nTPM: 98.2
RHH5308_R3675
104.1
RHH5216_R3588
182.1
RHH5245_R3617
102.9
RHH5274_R3646
98.2
Non-switched memory B-cell nTPM: 151.4
Samples: 4
Max nTPM: 182.7
Min nTPM: 129.5
RHH5309_R3676
135.3
RHH5217_R3589
182.7
RHH5246_R3618
157.9
RHH5275_R3647
129.5
Plasmablast nTPM: 433.1
Samples: 4
Max nTPM: 478.6
Min nTPM: 359.6
RHH5312_R3679
471.0
RHH5220_R3592
359.6
RHH5249_R3621
478.6
RHH5278_R3650
423.1
Switched memory B-cell nTPM: 165.1
Samples: 4
Max nTPM: 187.7
Min nTPM: 142.4
RHH5311_R3678
142.4
RHH5219_R3591
166.1
RHH5248_R3620
187.7
RHH5277_R3649
164.2
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
40.1
Schmiedel sample id
TPM
Naive B-cell TPM: 40.1
Samples: 91
Max TPM: 53.7
Min TPM: 27.5
B_CELL_NAIVE_1
53.7
B_CELL_NAIVE_2
51.4
B_CELL_NAIVE_3
50.8
B_CELL_NAIVE_4
50.1
B_CELL_NAIVE_5
49.3
B_CELL_NAIVE_6
48.5
B_CELL_NAIVE_7
48.3
B_CELL_NAIVE_8
48.1
B_CELL_NAIVE_9
48.1
B_CELL_NAIVE_10
47.2
B_CELL_NAIVE_11
46.0
B_CELL_NAIVE_12
45.8
B_CELL_NAIVE_13
45.4
B_CELL_NAIVE_14
45.4
B_CELL_NAIVE_15
45.2
B_CELL_NAIVE_16
44.9
B_CELL_NAIVE_17
44.6
B_CELL_NAIVE_18
44.5
B_CELL_NAIVE_19
44.5
B_CELL_NAIVE_20
43.8
B_CELL_NAIVE_21
43.6
B_CELL_NAIVE_22
43.3
B_CELL_NAIVE_23
43.0
B_CELL_NAIVE_24
42.6
B_CELL_NAIVE_25
42.5
B_CELL_NAIVE_26
42.3
B_CELL_NAIVE_27
42.2
B_CELL_NAIVE_28
42.2
B_CELL_NAIVE_29
42.2
B_CELL_NAIVE_30
42.0
B_CELL_NAIVE_31
41.9
B_CELL_NAIVE_32
41.5
B_CELL_NAIVE_33
41.0
B_CELL_NAIVE_34
40.8
B_CELL_NAIVE_35
40.8
B_CELL_NAIVE_36
40.6
B_CELL_NAIVE_37
40.5
B_CELL_NAIVE_38
40.4
B_CELL_NAIVE_39
40.0
B_CELL_NAIVE_40
39.7
B_CELL_NAIVE_41
39.6
B_CELL_NAIVE_42
39.5
B_CELL_NAIVE_43
39.5
B_CELL_NAIVE_44
39.4
B_CELL_NAIVE_45
39.4
B_CELL_NAIVE_46
39.3
B_CELL_NAIVE_47
39.2
B_CELL_NAIVE_48
39.2
B_CELL_NAIVE_49
39.0
B_CELL_NAIVE_50
38.8
B_CELL_NAIVE_51
38.8
B_CELL_NAIVE_52
38.8
B_CELL_NAIVE_53
38.8
B_CELL_NAIVE_54
38.8
B_CELL_NAIVE_55
38.7
B_CELL_NAIVE_56
38.5
B_CELL_NAIVE_57
38.4
B_CELL_NAIVE_58
38.2
B_CELL_NAIVE_59
38.1
B_CELL_NAIVE_60
38.1
B_CELL_NAIVE_61
37.9
B_CELL_NAIVE_62
37.7
B_CELL_NAIVE_63
37.7
B_CELL_NAIVE_64
37.7
B_CELL_NAIVE_65
37.6
B_CELL_NAIVE_66
37.4
B_CELL_NAIVE_67
37.3
B_CELL_NAIVE_68
37.0
B_CELL_NAIVE_69
36.9
B_CELL_NAIVE_70
36.9
B_CELL_NAIVE_71
36.9
B_CELL_NAIVE_72
36.7
B_CELL_NAIVE_73
36.6
B_CELL_NAIVE_74
36.4
B_CELL_NAIVE_75
36.2
B_CELL_NAIVE_76
35.9
B_CELL_NAIVE_77
35.8
B_CELL_NAIVE_78
35.6
B_CELL_NAIVE_79
34.9
B_CELL_NAIVE_80
34.7
B_CELL_NAIVE_81
34.6
B_CELL_NAIVE_82
34.2
B_CELL_NAIVE_83
34.1
B_CELL_NAIVE_84
33.4
B_CELL_NAIVE_85
33.0
B_CELL_NAIVE_86
32.8
B_CELL_NAIVE_87
32.4
B_CELL_NAIVE_88
32.3
B_CELL_NAIVE_89
32.2
B_CELL_NAIVE_90
30.6
B_CELL_NAIVE_91
27.5
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The Human Protein Atlas project is funded
