A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
68.8
nTPM
Monaco:
530.2
nTPM
Schmiedel:
74.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
68.8
HPA sample
nTPM
Classical monocyte nTPM: 60.4
Samples: 6
Max nTPM: 74.2
Min nTPM: 55.8
P10809_1003
56.8
P10809_1020
58.8
P10809_1039
74.2
P10809_1058
57.8
P10809_1080
59.2
P10809_1107
55.8
Intermediate monocyte nTPM: 61.9
Samples: 6
Max nTPM: 101.2
Min nTPM: 43.1
P10809_1004
55.4
P10809_1023
43.1
P10809_1042
75.6
P10809_1061
101.2
P10809_1081
45.3
P10809_1108
50.7
Non-classical monocyte nTPM: 68.8
Samples: 5
Max nTPM: 82.9
Min nTPM: 55.3
P10809_1005
55.3
P10809_1053
82.9
P10809_1072
82.7
P10809_1082
57.9
P10809_1109
65.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
530.2
Monaco sample
nTPM
Classical monocyte nTPM: 530.2
Samples: 4
Max nTPM: 867.4
Min nTPM: 299.8
RHH5313_R3680
315.9
RHH5221_R3593
637.6
RHH5250_R3622
867.4
RHH5279_R3651
299.8
Intermediate monocyte nTPM: 493.8
Samples: 4
Max nTPM: 722.8
Min nTPM: 273.9
RHH5314_R3681
273.9
RHH5222_R3594
722.8
RHH5251_R3623
687.1
RHH5280_R3652
291.2
Non-classical monocyte nTPM: 454.4
Samples: 4
Max nTPM: 693.9
Min nTPM: 289.9
RHH5315_R3682
289.9
RHH5223_R3595
693.9
RHH5252_R3624
495.8
RHH5281_R3653
337.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
74.2
Schmiedel sample id
TPM
Classical monocyte TPM: 56.8
Samples: 91
Max TPM: 83.1
Min TPM: 33.5
MONOCYTES_1
83.1
MONOCYTES_2
73.4
MONOCYTES_3
71.4
MONOCYTES_4
70.4
MONOCYTES_5
69.2
MONOCYTES_6
69.2
MONOCYTES_7
68.1
MONOCYTES_8
66.1
MONOCYTES_9
66.0
MONOCYTES_10
65.9
MONOCYTES_11
65.8
MONOCYTES_12
65.3
MONOCYTES_13
64.7
MONOCYTES_14
64.3
MONOCYTES_15
63.7
MONOCYTES_16
63.1
MONOCYTES_17
62.6
MONOCYTES_18
62.5
MONOCYTES_19
62.4
MONOCYTES_20
62.2
MONOCYTES_21
62.0
MONOCYTES_22
61.9
MONOCYTES_23
61.9
MONOCYTES_24
61.4
MONOCYTES_25
60.4
MONOCYTES_26
60.4
MONOCYTES_27
60.1
MONOCYTES_28
60.1
MONOCYTES_29
60.0
MONOCYTES_30
59.9
MONOCYTES_31
59.9
MONOCYTES_32
59.2
MONOCYTES_33
58.7
MONOCYTES_34
58.7
MONOCYTES_35
58.7
MONOCYTES_36
57.9
MONOCYTES_37
57.7
MONOCYTES_38
57.4
MONOCYTES_39
57.3
MONOCYTES_40
57.2
MONOCYTES_41
57.2
MONOCYTES_42
57.2
MONOCYTES_43
56.6
MONOCYTES_44
56.6
MONOCYTES_45
56.5
MONOCYTES_46
56.5
MONOCYTES_47
56.1
MONOCYTES_48
55.9
MONOCYTES_49
55.5
MONOCYTES_50
55.2
MONOCYTES_51
55.2
MONOCYTES_52
55.0
MONOCYTES_53
54.8
MONOCYTES_54
54.3
MONOCYTES_55
54.2
MONOCYTES_56
53.9
MONOCYTES_57
53.9
MONOCYTES_58
53.5
MONOCYTES_59
53.4
MONOCYTES_60
53.4
MONOCYTES_61
53.3
MONOCYTES_62
53.3
MONOCYTES_63
53.2
MONOCYTES_64
53.2
MONOCYTES_65
52.6
MONOCYTES_66
52.3
MONOCYTES_67
52.1
MONOCYTES_68
51.9
MONOCYTES_69
51.8
MONOCYTES_70
51.8
MONOCYTES_71
51.5
MONOCYTES_72
51.4
MONOCYTES_73
51.4
MONOCYTES_74
51.4
MONOCYTES_75
51.3
MONOCYTES_76
50.6
MONOCYTES_77
50.4
MONOCYTES_78
50.4
MONOCYTES_79
50.1
MONOCYTES_80
49.7
MONOCYTES_81
49.0
MONOCYTES_82
48.7
MONOCYTES_83
48.7
MONOCYTES_84
47.3
MONOCYTES_85
46.8
MONOCYTES_86
46.8
MONOCYTES_87
46.8
MONOCYTES_88
46.4
MONOCYTES_89
45.1
MONOCYTES_90
43.6
MONOCYTES_91
33.5
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Non-classical monocyte TPM: 74.2
Samples: 90
Max TPM: 96.5
Min TPM: 54.7
M2_1
96.5
M2_2
95.9
M2_3
92.0
M2_4
88.9
M2_5
88.8
M2_6
84.7
M2_7
84.6
M2_8
84.5
M2_9
82.7
M2_10
82.2
M2_11
81.6
M2_12
81.5
M2_13
81.5
M2_14
80.9
M2_15
80.2
M2_16
79.8
M2_17
79.2
M2_18
79.0
M2_19
79.0
M2_20
78.9
M2_21
78.8
M2_22
78.7
M2_23
78.5
M2_24
78.5
M2_25
78.2
M2_26
78.1
M2_27
78.0
M2_28
78.0
M2_29
77.9
M2_30
77.6
M2_31
77.5
M2_32
77.5
M2_33
77.3
M2_34
77.0
M2_35
76.7
M2_36
76.3
M2_37
76.0
M2_38
75.7
M2_39
75.4
M2_40
75.2
M2_41
74.8
M2_42
74.8
M2_43
74.8
M2_44
74.5
M2_45
74.5
M2_46
74.3
M2_47
74.1
M2_48
73.8
M2_49
72.8
M2_50
72.7
M2_51
72.4
M2_52
72.4
M2_53
72.3
M2_54
72.0
M2_55
71.7
M2_56
71.7
M2_57
71.3
M2_58
71.0
M2_59
71.0
M2_60
70.7
M2_61
70.7
M2_62
70.6
M2_63
70.5
M2_64
70.5
M2_65
70.4
M2_66
70.3
M2_67
70.1
M2_68
70.1
M2_69
69.8
M2_70
69.5
M2_71
69.5
M2_72
69.1
M2_73
68.9
M2_74
68.1
M2_75
67.8
M2_76
67.6
M2_77
67.4
M2_78
67.1
M2_79
66.8
M2_80
66.0
M2_81
65.7
M2_82
64.9
M2_83
64.9
M2_84
64.6
M2_85
64.2
M2_86
60.6
M2_87
58.9
M2_88
57.5
M2_89
56.0
M2_90
54.7
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The Human Protein Atlas project is funded
