MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:120.0 nTPM
HPA Brain:93.0 nTPM
GTEx:120.0 nTPM
FANTOM5:41.8 Scaled Tags Per Million
Pig:77.9 nTPM
Mouse:83.1 nTPM
Allen mouse:4.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 93.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 83.1
2586 Male, age 75, left hemisphere 114.4
1827 Male, age 72, unknown 99.2
2019 Male, age 18, unknown 96.0
2666 Male, age 74, left hemisphere 89.8
2411 Female, age 72, unknown 82.0
2828 Female, age 72, unknown 81.9
1870 Female, age 42, unknown 68.7
2219 Male, age 76, both hemispheres 68.4
1830 Male, age 51, unknown 65.9
1833 Male, age 53, unknown 64.7
Dorsal raphe nucleus
nTPM: 76.3
2298 Female, age 72, unknown 89.7
2047 Male, age 72, unknown 80.7
1828 Male, age 53, unknown 79.9
2016 Female, age 72, unknown 66.3
2750 Male, age 76, both hemispheres 65.0
Inferior colliculus
nTPM: 78.1
2097 Female, age 72, unknown 91.9
1890 Male, age 53, unknown 75.0
1848 Female, age 42, unknown 74.8
2849 Male, age 72, unknown 70.7
Median raphe nucleus
nTPM: 67.4
2220 Male, age 76, midline 67.4
Periaquaductal grey, anterior
nTPM: 90.0
1795 Male, age 51, unknown 98.4
1947 Male, age 18, unknown 87.2
2502 Female, age 75, unknown 84.4
Periaquaductal grey, dorsal
nTPM: 68.5
1831 Male, age 72, unknown 72.9
1840 Male, age 53, unknown 69.0
2464 Female, age 72, unknown 66.1
2850 Male, age 76, both hemispheres 66.1
Periaquaductal grey, lateral
nTPM: 71.3
2053 Male, age 18, unknown 75.8
2272 Male, age 74, both hemispheres 75.2
2140 Male, age 76, both hemispheres 62.8
Pretectal area
nTPM: 93.0
2007 Male, age 72, unknown 121.4
1816 Male, age 51, unknown 119.5
1817 Female, age 42, unknown 112.8
1815 Male, age 53, unknown 105.4
1944 Female, age 72, unknown 102.3
2667 Female, age 75, unknown 92.5
2407 Male, age 75, both hemispheres 86.9
2273 Male, age 74, both hemispheres 77.9
2825 Male, age 18, unknown 72.7
2224 Female, age 72, unknown 69.4
2316 Male, age 76, right hemisphere 62.4
Red nucleus
nTPM: 70.0
2785 Male, age 18, unknown 89.7
1821 Female, age 72, unknown 82.2
2584 Male, age 75, left hemisphere 81.4
2503 Female, age 72, unknown 70.1
2588 Male, age 74, left hemisphere 69.0
2725 Female, age 75, unknown 68.9
1954 Female, age 42, unknown 68.0
2769 Male, age 72, unknown 64.9
1865 Male, age 51, unknown 64.4
1904 Male, age 53, unknown 63.2
2227 Male, age 72, unknown 61.7
2823 Male, age 76, right hemisphere 56.9
Substantia nigra
nTPM: 82.6
1941 Male, age 53, unknown 100.6
2583 Male, age 75, right hemisphere 98.0
1916 Female, age 42, unknown 94.6
1889 Female, age 72, unknown 94.0
2665 Male, age 74, both hemispheres 90.2
1851 Male, age 51, unknown 84.6
2590 Female, age 75, unknown 73.0
2409 Female, age 72, unknown 68.0
2241 Male, age 72, unknown 66.7
2699 Male, age 18, unknown 56.6
Superior colliculus
nTPM: 86.6
2664 Male, age 75, both hemispheres 113.0
2668 Female, age 75, unknown 100.2
2261 Male, age 18, unknown 97.4
2087 Female, age 72, unknown 93.7
1796 Male, age 53, unknown 92.8
2587 Male, age 74, left hemisphere 79.0
1839 Male, age 51, unknown 77.2
1995 Male, age 72, unknown 74.8
1913 Female, age 42, unknown 70.7
1895 Male, age 76, right hemisphere 66.8
Ventral tegmental area
nTPM: 78.0
2410 Female, age 72, unknown 91.7
1915 Female, age 42, unknown 80.4
2218 Male, age 76, both hemispheres 77.5
1942 Male, age 51, unknown 76.4
2223 Female, age 72, unknown 74.6
2021 Male, age 53, unknown 67.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 120.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 120.0
Samples: 183

Max nTPM: 341.2
Min nTPM: 51.9
Std nTPM: 38.5
Median nTPM: 113.4
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 341.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 319.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 253.7
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 230.9
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 219.0
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 217.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 207.3
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 191.0
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 182.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 180.0
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 178.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 41.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 41.8
FF:10158-103A5 76 years, female 41.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 77.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 46.0
Samples: 4

Max nTPM: 66.7
Min nTPM: 33.7
Sample A Female 66.7
Sample B Female 35.4
Sample C Male 48.1
Sample D Male 33.7
Midbrain
nTPM: 68.5
Samples: 4

Max nTPM: 92.0
Min nTPM: 44.1
Sample A Female 58.9
Sample B Female 44.1
Sample C Male 92.0
Sample D Male 79.0
Periaqueductal gray
nTPM: 42.1
Samples: 3

Max nTPM: 50.8
Min nTPM: 36.3
Sample B Female 39.1
Sample C Male 50.8
Sample D Male 36.3
Superior colliculi
nTPM: 77.9
Samples: 4

Max nTPM: 99.5
Min nTPM: 50.3
Sample A Female 92.5
Sample B Female 50.3
Sample C Male 99.5
Sample D Male 69.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 83.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 83.1
Samples: 4

Max nTPM: 97.1
Min nTPM: 74.7
Sample A Male 97.1
Sample B Male 76.9
Sample C Female 74.7
Sample D Female 83.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 4.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.5
69526791 Antisense, RP_050421_01_F05, Mouse strain C57BL/6J (56 days, male) 6.8
81600128 Antisense, RP_080306_04_E09, Mouse strain C57BL/6J (56 days, male) 2.2

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