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  • TISSUE

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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:100.3 nTPM
HPA Brain:93.5 nTPM
GTEx:100.3 nTPM
FANTOM5:45.7 Scaled Tags Per Million
Pig:50.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

93.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 87.3
2565 Male, age 75, midline 119.5
1981 Female, age 72, midline 88.3
2194 Female, age 79, both hemispheres 83.9
2816 Male, age 47, midline 77.6
2048 Male, age 55, midline 67.1
Cervical spinal cord, dorsal horn
nTPM: 82.2
2173 Female, age 72, unknown 91.4
2297 Male, age 75, both hemispheres 88.6
2069 Male, age 47, both hemispheres 84.6
1877 Male, age 55, unknown 80.7
2721 Male, age 90, both hemispheres 80.4
2296 Male, age 66, both hemispheres 67.2
Cervical spinal cord, ventral horn
nTPM: 93.5
2480 Male, age 75, both hemispheres 119.2
2295 Male, age 66, both hemispheres 100.5
2809 Male, age 90, both hemispheres 99.8
2820 Female, age 79, both hemispheres 81.1
2098 Female, age 72, unknown 80.4
2068 Male, age 55, unknown 80.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

100.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 100.3
Samples: 204

Max nTPM: 167.0
Min nTPM: 55.8
Std nTPM: 21.2
Median nTPM: 97.2
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 167.0
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 160.5
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 153.0
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 151.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 149.1
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 145.9
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 145.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 145.3
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 143.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 142.5
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 141.7
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 141.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 141.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 140.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 140.1
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 139.1
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 138.5
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 136.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 134.3
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 130.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 130.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 129.5
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 128.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 125.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 124.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 123.9
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 123.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 122.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 122.8
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 122.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 121.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 121.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 120.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 118.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 118.4
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 118.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 117.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 117.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 117.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 117.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 116.3
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 116.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 115.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 115.4
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 114.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 114.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 113.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 113.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 113.6
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 113.6
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 113.3
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 112.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 112.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 112.4
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 112.1
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 111.9
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 111.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 111.6
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 111.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 111.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 111.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 110.6
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 109.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 109.6
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 109.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 107.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 107.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 106.9
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 106.8
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 106.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 106.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 106.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 106.1
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 105.5
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 104.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 104.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 104.6
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 104.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 104.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 103.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 103.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 103.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 102.5
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 102.5
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 102.5
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 101.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 101.1
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 100.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 100.2
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 100.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 99.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 99.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 99.0
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 98.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 98.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 98.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 98.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 98.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 98.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 98.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 97.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 97.3
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 97.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 96.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 96.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 96.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 95.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 95.5
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 95.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 95.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 95.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 94.7
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 94.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 94.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 94.3
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 93.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 93.3
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 93.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 93.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 93.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 92.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 92.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 92.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 92.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 92.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 92.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 91.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 91.0
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 90.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 90.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 90.5
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 89.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 89.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 89.3
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 89.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 89.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 88.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 88.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 88.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 88.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 88.4
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 88.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 88.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 88.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 88.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 87.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 87.7
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 87.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 87.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 87.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 86.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 86.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 85.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 85.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 85.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 85.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 85.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 84.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 84.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 84.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 84.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 84.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 83.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 83.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 83.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 82.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 82.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 81.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 81.9
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 81.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 81.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 81.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 81.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 80.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 80.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 80.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 79.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 79.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 79.2
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 79.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 77.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 75.9
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 75.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 73.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 73.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 72.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 72.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 72.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 71.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 71.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 70.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 70.2
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 69.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 68.9
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 68.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 67.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 66.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 64.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 64.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 64.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 63.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 62.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 59.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 55.8
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

45.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 45.7
FF:10181-103D1 60 years, female 65.3
FF:10159-103A6 76 years, female 26.1

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

50.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 41.8
Samples: 4

Max nTPM: 53.3
Min nTPM: 33.3
Sample A Female 53.3
Sample B Female 33.3
Sample C Male 38.1
Sample D Male 42.4
Ventral spinal cord
nTPM: 50.1
Samples: 4

Max nTPM: 55.8
Min nTPM: 42.2
Sample A Female 49.8
Sample B Female 55.8
Sample C Male 52.5
Sample D Male 42.2

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