HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:43.7 nTPM
HPA Brain:57.0 nTPM
GTEx:43.7 nTPM
FANTOM5:49.0 Scaled Tags Per Million
Pig:51.3 nTPM
Mouse:91.6 nTPM
Allen mouse:2.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 57.0
Sample id Sample description nTPM
Hippocampus
nTPM: 53.4
1898 Male, age 80, left hemisphere 61.0
1855 Male, age 76, left hemisphere 54.2
2621 Female, age 67, right hemisphere 52.8
2148 Female, age 91, left hemisphere 52.0
2529 Female, age 94, left hemisphere 51.6
1911 Female, age 85, right hemisphere 48.9
Dentate gyrus
nTPM: 50.6
1927 Female, age 91, both hemispheres 56.2
2530 Female, age 94, left hemisphere 52.8
2010 Male, age 76, both hemispheres 52.0
2246 Female, age 85, both hemispheres 48.5
2528 Male, age 74, both hemispheres 48.2
2531 Female, age 67, both hemispheres 45.9
Entorhinal gyrus
nTPM: 52.7
2764 Male, age 80, right hemisphere 55.9
1938 Female, age 85, left hemisphere 55.6
2613 Female, age 94, left hemisphere 54.6
1787 Male, age 76, left hemisphere 52.1
2117 Female, age 91, right hemisphere 49.7
2686 Male, age 75, right hemisphere 48.2
Hippocampus, CA1
nTPM: 53.3
2749 Male, age 80, left hemisphere 70.4
1873 Female, age 85, both hemispheres 53.7
2045 Male, age 76, both hemispheres 50.1
2527 Male, age 74, both hemispheres 49.0
2082 Female, age 91, right hemisphere 43.3
Hippocampus, CA2
nTPM: 51.7
1892 Male, age 76, both hemispheres 59.6
1963 Male, age 80, left hemisphere 57.7
2437 Female, age 94, left hemisphere 51.5
2249 Male, age 74, both hemispheres 50.3
2113 Female, age 91, right hemisphere 46.6
1940 Female, age 85, left hemisphere 44.3
Hippocampus, CA3
nTPM: 54.8
2436 Male, age 74, both hemispheres 64.8
2137 Male, age 80, left hemisphere 57.8
1867 Male, age 76, both hemispheres 53.1
2620 Female, age 94, left hemisphere 52.0
2861 Female, age 67, both hemispheres 51.6
1891 Female, age 85, both hemispheres 49.5
Parahippocampal cortex
nTPM: 52.6
1850 Male, age 80, both hemispheres 58.6
2245 Female, age 91, both hemispheres 55.7
2250 Female, age 67, right hemisphere 55.2
1933 Female, age 85, both hemispheres 54.4
2532 Female, age 72, left hemisphere 53.4
2622 Female, age 67, right hemisphere 52.9
2693 Female, age 94, both hemispheres 51.4
2692 Male, age 74, both hemispheres 51.0
1990 Female, age 91, right hemisphere 47.6
2018 Male, age 76, both hemispheres 46.0
Perirhinal gyrus
nTPM: 57.0
1847 Female, age 91, left hemisphere 66.0
1841 Female, age 85, right hemisphere 58.7
1794 Male, age 80, right hemisphere 58.5
2521 Female, age 94, right hemisphere 52.2
2848 Male, age 76, right hemisphere 49.5
Subiculum
nTPM: 50.0
1901 Male, age 80, both hemispheres 55.3
1977 Female, age 85, both hemispheres 51.3
2619 Male, age 74, both hemispheres 49.2
2042 Male, age 76, both hemispheres 48.3
2729 Female, age 91, right hemisphere 47.8
2438 Female, age 94, left hemisphere 47.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 43.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 43.7
Samples: 255

Max nTPM: 67.3
Min nTPM: 24.7
Std nTPM: 8.2
Median nTPM: 43.1
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 67.3
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 64.9
GTEX-1O9I2-0011-R1a-SM-F2TAW 50-59 years, male 63.5
GTEX-11ZUS-0011-R1a-SM-GI4W7 30-39 years, male 63.0
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 62.6
GTEX-1MA7X-0011-R1b-SM-F2TAB 60-69 years, male 62.5
GTEX-1R9K4-0011-R1a-SM-F342F 60-69 years, male 62.5
GTEX-1JJ6O-0011-R1b-SM-F2I2M 60-69 years, male 61.0
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 60.1
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 59.5
GTEX-12126-0011-R1a-SM-GJ3Q8 20-29 years, male 58.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 49.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 49.0
FF:10169-103B7 60 years, female 57.1
FF:10153-102I9 76 years, female 40.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 51.3
Pig sample Sample description nTPM
Subiculum
nTPM: 48.3
Samples: 4

Max nTPM: 61.7
Min nTPM: 42.6
Sample A Female 61.7
Sample B Female 44.7
Sample C Male 42.6
Sample D Male 44.0
Dorsal hippocampus
nTPM: 51.3
Samples: 4

Max nTPM: 61.0
Min nTPM: 40.9
Sample A Female 61.0
Sample B Female 49.4
Sample C Male 53.9
Sample D Male 40.9
Entorhinal cortex
nTPM: 50.7
Samples: 4

Max nTPM: 53.3
Min nTPM: 44.5
Sample A Female 52.2
Sample B Female 53.3
Sample C Male 52.6
Sample D Male 44.5
Ventral hippocampus
nTPM: 47.6
Samples: 4

Max nTPM: 59.1
Min nTPM: 35.5
Sample A Female 47.3
Sample B Female 35.5
Sample C Male 59.1
Sample D Male 48.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 91.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 86.8
Samples: 4

Max nTPM: 91.9
Min nTPM: 77.6
Sample A Male 89.7
Sample B Male 87.9
Sample C Female 91.9
Sample D Female 77.6
Hippocampal formation
nTPM: 91.6
Samples: 4

Max nTPM: 97.5
Min nTPM: 86.1
Sample A Male 97.5
Sample B Male 86.1
Sample C Female 95.7
Sample D Female 86.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 2.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.7
386018 Antisense, RP_040804_01_A05, Mouse strain C57BL/6J (56 days, male) 2.7

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