A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
6.2
nTPM
Monaco:
10.4
nTPM
Schmiedel:
65.0
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
6.2
HPA sample
nTPM
Memory B-cell nTPM: 6.1
Samples: 6
Max nTPM: 23.1
Min nTPM: 0.4
P10809_1017
1.7
P10809_1025
5.9
P10809_1044
23.1
P10809_1063
0.9
P10809_1092
0.4
P10809_1105
4.8
Naive B-cell nTPM: 1.3
Samples: 6
Max nTPM: 2.3
Min nTPM: 0.3
P10809_1011
0.3
P10809_1029
1.8
P10809_1048
0.3
P10809_1067
1.5
P10809_1091
2.3
P10809_1104
1.5
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
10.4
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 4.1
Samples: 4
Max nTPM: 6.1
Min nTPM: 1.4
RHH5310_R3677
4.3
RHH5218_R3590
4.7
RHH5247_R3619
1.4
RHH5276_R3648
6.1
Naive B-cell nTPM: 5.0
Samples: 4
Max nTPM: 7.8
Min nTPM: 2.4
RHH5308_R3675
2.4
RHH5216_R3588
5.3
RHH5245_R3617
7.8
RHH5274_R3646
4.3
Non-switched memory B-cell nTPM: 4.1
Samples: 4
Max nTPM: 9.0
Min nTPM: 1.2
RHH5309_R3676
1.2
RHH5217_R3589
2.6
RHH5246_R3618
3.7
RHH5275_R3647
9.0
Plasmablast nTPM: 10.4
Samples: 4
Max nTPM: 17.4
Min nTPM: 2.2
RHH5312_R3679
14.0
RHH5220_R3592
17.4
RHH5249_R3621
2.2
RHH5278_R3650
8.0
Switched memory B-cell nTPM: 4.4
Samples: 4
Max nTPM: 10.0
Min nTPM: 1.8
RHH5311_R3678
10.0
RHH5219_R3591
1.8
RHH5248_R3620
2.6
RHH5277_R3649
3.2
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
65.0
Schmiedel sample id
TPM
Naive B-cell TPM: 65.0
Samples: 91
Max TPM: 97.6
Min TPM: 45.8
B_CELL_NAIVE_1
97.6
B_CELL_NAIVE_2
93.6
B_CELL_NAIVE_3
87.1
B_CELL_NAIVE_4
81.2
B_CELL_NAIVE_5
77.0
B_CELL_NAIVE_6
72.2
B_CELL_NAIVE_7
71.8
B_CELL_NAIVE_8
71.5
B_CELL_NAIVE_9
71.5
B_CELL_NAIVE_10
71.3
B_CELL_NAIVE_11
71.1
B_CELL_NAIVE_12
70.7
B_CELL_NAIVE_13
70.5
B_CELL_NAIVE_14
70.3
B_CELL_NAIVE_15
69.8
B_CELL_NAIVE_16
69.7
B_CELL_NAIVE_17
68.9
B_CELL_NAIVE_18
68.6
B_CELL_NAIVE_19
68.4
B_CELL_NAIVE_20
68.0
B_CELL_NAIVE_21
67.8
B_CELL_NAIVE_22
67.5
B_CELL_NAIVE_23
67.0
B_CELL_NAIVE_24
67.0
B_CELL_NAIVE_25
66.8
B_CELL_NAIVE_26
66.8
B_CELL_NAIVE_27
66.7
B_CELL_NAIVE_28
66.6
B_CELL_NAIVE_29
66.5
B_CELL_NAIVE_30
66.4
B_CELL_NAIVE_31
66.3
B_CELL_NAIVE_32
66.2
B_CELL_NAIVE_33
65.9
B_CELL_NAIVE_34
65.7
B_CELL_NAIVE_35
65.5
B_CELL_NAIVE_36
65.3
B_CELL_NAIVE_37
65.3
B_CELL_NAIVE_38
65.3
B_CELL_NAIVE_39
65.2
B_CELL_NAIVE_40
64.9
B_CELL_NAIVE_41
64.8
B_CELL_NAIVE_42
64.7
B_CELL_NAIVE_43
64.5
B_CELL_NAIVE_44
64.3
B_CELL_NAIVE_45
64.2
B_CELL_NAIVE_46
64.1
B_CELL_NAIVE_47
64.0
B_CELL_NAIVE_48
64.0
B_CELL_NAIVE_49
63.9
B_CELL_NAIVE_50
63.8
B_CELL_NAIVE_51
63.8
B_CELL_NAIVE_52
63.7
B_CELL_NAIVE_53
63.6
B_CELL_NAIVE_54
63.3
B_CELL_NAIVE_55
63.2
B_CELL_NAIVE_56
63.1
B_CELL_NAIVE_57
63.0
B_CELL_NAIVE_58
63.0
B_CELL_NAIVE_59
62.6
B_CELL_NAIVE_60
62.6
B_CELL_NAIVE_61
62.5
B_CELL_NAIVE_62
62.4
B_CELL_NAIVE_63
62.4
B_CELL_NAIVE_64
62.1
B_CELL_NAIVE_65
62.0
B_CELL_NAIVE_66
61.9
B_CELL_NAIVE_67
61.4
B_CELL_NAIVE_68
61.4
B_CELL_NAIVE_69
61.4
B_CELL_NAIVE_70
61.4
B_CELL_NAIVE_71
61.3
B_CELL_NAIVE_72
61.0
B_CELL_NAIVE_73
60.3
B_CELL_NAIVE_74
60.2
B_CELL_NAIVE_75
60.0
B_CELL_NAIVE_76
59.9
B_CELL_NAIVE_77
59.8
B_CELL_NAIVE_78
59.7
B_CELL_NAIVE_79
58.8
B_CELL_NAIVE_80
58.5
B_CELL_NAIVE_81
58.0
B_CELL_NAIVE_82
57.7
B_CELL_NAIVE_83
57.4
B_CELL_NAIVE_84
56.8
B_CELL_NAIVE_85
56.0
B_CELL_NAIVE_86
55.8
B_CELL_NAIVE_87
55.6
B_CELL_NAIVE_88
54.6
B_CELL_NAIVE_89
54.1
B_CELL_NAIVE_90
51.1
B_CELL_NAIVE_91
45.8
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