A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
4.7
nTPM
Monaco:
7.6
nTPM
Schmiedel:
62.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4.7
HPA sample
nTPM
Classical monocyte nTPM: 2.0
Samples: 6
Max nTPM: 2.9
Min nTPM: 0.8
P10809_1003
0.8
P10809_1020
2.9
P10809_1039
2.2
P10809_1058
1.6
P10809_1080
2.1
P10809_1107
2.2
Intermediate monocyte nTPM: 4.0
Samples: 6
Max nTPM: 6.6
Min nTPM: 1.4
P10809_1004
4.4
P10809_1023
2.3
P10809_1042
5.1
P10809_1061
3.9
P10809_1081
1.4
P10809_1108
6.6
Non-classical monocyte nTPM: 4.7
Samples: 5
Max nTPM: 12.9
Min nTPM: 1.5
P10809_1005
1.5
P10809_1053
3.1
P10809_1072
12.9
P10809_1082
1.9
P10809_1109
4.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
7.6
Monaco sample
nTPM
Classical monocyte nTPM: 7.6
Samples: 4
Max nTPM: 14.9
Min nTPM: 4.6
RHH5313_R3680
4.6
RHH5221_R3593
5.0
RHH5250_R3622
5.7
RHH5279_R3651
14.9
Intermediate monocyte nTPM: 6.0
Samples: 4
Max nTPM: 9.0
Min nTPM: 3.8
RHH5314_R3681
6.2
RHH5222_R3594
3.8
RHH5251_R3623
9.0
RHH5280_R3652
4.9
Non-classical monocyte nTPM: 7.5
Samples: 4
Max nTPM: 15.1
Min nTPM: 4.8
RHH5315_R3682
5.0
RHH5223_R3595
5.0
RHH5252_R3624
15.1
RHH5281_R3653
4.8
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
62.7
Schmiedel sample id
TPM
Classical monocyte TPM: 44.1
Samples: 91
Max TPM: 58.6
Min TPM: 34.3
MONOCYTES_1
58.6
MONOCYTES_2
55.5
MONOCYTES_3
53.6
MONOCYTES_4
51.9
MONOCYTES_5
51.6
MONOCYTES_6
51.5
MONOCYTES_7
50.9
MONOCYTES_8
50.5
MONOCYTES_9
50.0
MONOCYTES_10
49.3
MONOCYTES_11
49.0
MONOCYTES_12
48.6
MONOCYTES_13
48.6
MONOCYTES_14
48.5
MONOCYTES_15
48.4
MONOCYTES_16
48.4
MONOCYTES_17
48.1
MONOCYTES_18
48.0
MONOCYTES_19
48.0
MONOCYTES_20
47.9
MONOCYTES_21
46.9
MONOCYTES_22
46.8
MONOCYTES_23
46.7
MONOCYTES_24
46.5
MONOCYTES_25
46.5
MONOCYTES_26
46.3
MONOCYTES_27
46.2
MONOCYTES_28
46.1
MONOCYTES_29
46.1
MONOCYTES_30
46.0
MONOCYTES_31
45.7
MONOCYTES_32
45.5
MONOCYTES_33
45.3
MONOCYTES_34
45.1
MONOCYTES_35
44.9
MONOCYTES_36
44.9
MONOCYTES_37
44.8
MONOCYTES_38
44.6
MONOCYTES_39
44.6
MONOCYTES_40
44.3
MONOCYTES_41
44.1
MONOCYTES_42
44.0
MONOCYTES_43
44.0
MONOCYTES_44
43.8
MONOCYTES_45
43.8
MONOCYTES_46
43.8
MONOCYTES_47
43.8
MONOCYTES_48
43.8
MONOCYTES_49
43.7
MONOCYTES_50
43.6
MONOCYTES_51
43.5
MONOCYTES_52
43.5
MONOCYTES_53
43.4
MONOCYTES_54
43.4
MONOCYTES_55
43.3
MONOCYTES_56
43.1
MONOCYTES_57
43.1
MONOCYTES_58
42.8
MONOCYTES_59
42.7
MONOCYTES_60
42.6
MONOCYTES_61
42.5
MONOCYTES_62
42.4
MONOCYTES_63
42.3
MONOCYTES_64
42.3
MONOCYTES_65
42.2
MONOCYTES_66
42.1
MONOCYTES_67
41.7
MONOCYTES_68
41.7
MONOCYTES_69
41.4
MONOCYTES_70
41.2
MONOCYTES_71
41.1
MONOCYTES_72
41.1
MONOCYTES_73
40.6
MONOCYTES_74
40.4
MONOCYTES_75
39.9
MONOCYTES_76
39.7
MONOCYTES_77
39.5
MONOCYTES_78
38.7
MONOCYTES_79
38.5
MONOCYTES_80
38.5
MONOCYTES_81
38.3
MONOCYTES_82
38.3
MONOCYTES_83
37.5
MONOCYTES_84
37.4
MONOCYTES_85
37.4
MONOCYTES_86
36.8
MONOCYTES_87
36.5
MONOCYTES_88
36.4
MONOCYTES_89
35.4
MONOCYTES_90
34.5
MONOCYTES_91
34.3
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Non-classical monocyte TPM: 62.7
Samples: 90
Max TPM: 84.3
Min TPM: 48.7
M2_1
84.3
M2_2
78.5
M2_3
77.9
M2_4
74.5
M2_5
73.5
M2_6
73.3
M2_7
72.5
M2_8
71.3
M2_9
70.9
M2_10
70.6
M2_11
69.5
M2_12
69.4
M2_13
69.3
M2_14
69.2
M2_15
68.5
M2_16
68.5
M2_17
67.8
M2_18
67.8
M2_19
67.8
M2_20
67.4
M2_21
67.2
M2_22
67.0
M2_23
66.9
M2_24
66.9
M2_25
66.9
M2_26
66.8
M2_27
66.1
M2_28
65.4
M2_29
64.9
M2_30
64.8
M2_31
64.1
M2_32
64.1
M2_33
63.8
M2_34
63.5
M2_35
63.5
M2_36
63.4
M2_37
63.2
M2_38
63.1
M2_39
63.0
M2_40
63.0
M2_41
62.8
M2_42
62.6
M2_43
62.5
M2_44
62.5
M2_45
62.5
M2_46
62.5
M2_47
62.2
M2_48
62.2
M2_49
62.1
M2_50
61.7
M2_51
61.3
M2_52
61.1
M2_53
61.0
M2_54
60.9
M2_55
60.8
M2_56
60.6
M2_57
60.3
M2_58
59.9
M2_59
59.8
M2_60
59.8
M2_61
59.7
M2_62
59.6
M2_63
59.4
M2_64
59.4
M2_65
59.1
M2_66
58.9
M2_67
58.9
M2_68
58.8
M2_69
58.7
M2_70
57.8
M2_71
57.7
M2_72
57.6
M2_73
57.0
M2_74
56.6
M2_75
56.3
M2_76
56.1
M2_77
56.1
M2_78
56.0
M2_79
55.7
M2_80
55.6
M2_81
55.6
M2_82
55.2
M2_83
55.1
M2_84
55.0
M2_85
54.2
M2_86
53.3
M2_87
51.0
M2_88
49.9
M2_89
49.1
M2_90
48.7
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