MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:46.3 nTPM
HPA Brain:39.1 nTPM
GTEx:46.3 nTPM
FANTOM5:95.8 Scaled Tags Per Million
Pig:90.6 nTPM
Mouse:18.6 nTPM
Allen mouse:4.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 39.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 35.6
2586 Male, age 75, left hemisphere 45.4
2666 Male, age 74, left hemisphere 41.5
2219 Male, age 76, both hemispheres 36.6
2828 Female, age 72, unknown 36.5
1827 Male, age 72, unknown 35.4
1830 Male, age 51, unknown 35.1
1870 Female, age 42, unknown 33.1
2019 Male, age 18, unknown 32.5
1833 Male, age 53, unknown 30.8
2411 Female, age 72, unknown 29.5
Dorsal raphe nucleus
nTPM: 32.4
1828 Male, age 53, unknown 36.4
2016 Female, age 72, unknown 35.6
2047 Male, age 72, unknown 33.2
2750 Male, age 76, both hemispheres 29.3
2298 Female, age 72, unknown 27.4
Inferior colliculus
nTPM: 36.6
2849 Male, age 72, unknown 41.7
1890 Male, age 53, unknown 39.9
1848 Female, age 42, unknown 33.8
2097 Female, age 72, unknown 31.2
Median raphe nucleus
nTPM: 32.6
2220 Male, age 76, midline 32.6
Periaquaductal grey, anterior
nTPM: 34.8
1947 Male, age 18, unknown 37.0
1795 Male, age 51, unknown 36.5
2502 Female, age 75, unknown 31.0
Periaquaductal grey, dorsal
nTPM: 39.1
2850 Male, age 76, both hemispheres 44.1
1840 Male, age 53, unknown 41.1
1831 Male, age 72, unknown 38.8
2464 Female, age 72, unknown 32.3
Periaquaductal grey, lateral
nTPM: 38.0
2140 Male, age 76, both hemispheres 43.9
2272 Male, age 74, both hemispheres 35.8
2053 Male, age 18, unknown 34.3
Pretectal area
nTPM: 36.5
2667 Female, age 75, unknown 43.6
2407 Male, age 75, both hemispheres 42.5
2316 Male, age 76, right hemisphere 40.1
2825 Male, age 18, unknown 39.8
1815 Male, age 53, unknown 36.7
1944 Female, age 72, unknown 35.5
1816 Male, age 51, unknown 35.3
2273 Male, age 74, both hemispheres 34.3
1817 Female, age 42, unknown 33.6
2224 Female, age 72, unknown 31.6
2007 Male, age 72, unknown 28.1
Red nucleus
nTPM: 36.6
2584 Male, age 75, left hemisphere 45.2
2725 Female, age 75, unknown 40.5
2588 Male, age 74, left hemisphere 39.7
1865 Male, age 51, unknown 38.6
2227 Male, age 72, unknown 37.5
1954 Female, age 42, unknown 36.4
2503 Female, age 72, unknown 36.3
2823 Male, age 76, right hemisphere 34.8
2769 Male, age 72, unknown 34.6
2785 Male, age 18, unknown 33.2
1821 Female, age 72, unknown 31.6
1904 Male, age 53, unknown 31.1
Substantia nigra
nTPM: 37.7
2699 Male, age 18, unknown 44.7
2241 Male, age 72, unknown 42.5
2409 Female, age 72, unknown 40.6
1941 Male, age 53, unknown 38.2
2583 Male, age 75, right hemisphere 38.2
2665 Male, age 74, both hemispheres 37.1
2590 Female, age 75, unknown 35.4
1889 Female, age 72, unknown 33.4
1916 Female, age 42, unknown 33.3
1851 Male, age 51, unknown 33.2
Superior colliculus
nTPM: 35.7
2664 Male, age 75, both hemispheres 44.6
2087 Female, age 72, unknown 37.7
1913 Female, age 42, unknown 36.7
1895 Male, age 76, right hemisphere 36.2
1995 Male, age 72, unknown 34.9
2587 Male, age 74, left hemisphere 34.5
1796 Male, age 53, unknown 33.9
1839 Male, age 51, unknown 33.4
2261 Male, age 18, unknown 33.4
2668 Female, age 75, unknown 31.4
Ventral tegmental area
nTPM: 31.7
2223 Female, age 72, unknown 35.7
1942 Male, age 51, unknown 34.9
2218 Male, age 76, both hemispheres 34.1
2021 Male, age 53, unknown 32.6
1915 Female, age 42, unknown 30.5
2410 Female, age 72, unknown 22.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 46.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 46.3
Samples: 183

Max nTPM: 99.7
Min nTPM: 16.5
Std nTPM: 14.8
Median nTPM: 44.1
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 99.7
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 99.0
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 85.7
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 85.1
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 84.3
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 81.9
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 81.9
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 75.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 75.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 73.5
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 73.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 95.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 95.8
FF:10158-103A5 76 years, female 95.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 90.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 89.2
Samples: 4

Max nTPM: 103.7
Min nTPM: 66.8
Sample A Female 103.7
Sample B Female 83.7
Sample C Male 102.5
Sample D Male 66.8
Midbrain
nTPM: 84.4
Samples: 4

Max nTPM: 104.6
Min nTPM: 76.7
Sample A Female 78.2
Sample B Female 104.6
Sample C Male 76.7
Sample D Male 78.0
Periaqueductal gray
nTPM: 81.7
Samples: 3

Max nTPM: 89.4
Min nTPM: 72.2
Sample B Female 89.4
Sample C Male 83.5
Sample D Male 72.2
Superior colliculi
nTPM: 90.6
Samples: 4

Max nTPM: 104.8
Min nTPM: 75.3
Sample A Female 88.3
Sample B Female 75.3
Sample C Male 104.8
Sample D Male 93.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 18.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 18.6
Samples: 4

Max nTPM: 21.3
Min nTPM: 16.0
Sample A Male 16.0
Sample B Male 19.6
Sample C Female 21.3
Sample D Female 17.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 4.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.9
68562988 Antisense, RP_050120_02_H05, Mouse strain C57BL/6J (56 days, male) 4.9

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