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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
Tissue methods
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:168.3 nTPM
HPA:35.1 nTPM
GTEx:168.3 nTPM
FANTOM5:289.6 Scaled Tags Per Million
SMALL INTESTINE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA044153Antibody HPA054811Antibody CAB001974
Glandular cells Not detectedNot detectedNot detected







SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

35.1
overview
Male, age 65
Small intestine sample 232
nTPM: 5.4
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 35.5
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 56.2
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 43.4

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

168.3
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 168.3
Samples: 207

Max nTPM: 1517.7
Min nTPM: 5.6
Std nTPM: 264.8
Median nTPM: 46.2
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 1517.7
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 1348.3
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 1154.2
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 902.9
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 888.8
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 868.4
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 836.8
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 821.0
GTEX-117YX-0326-SM-5GICL 50-59 years, male 815.1
GTEX-178AV-1226-SM-GOR11 40-49 years, male 802.3
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 778.6
GTEX-1192X-2526-SM-59868 50-59 years, male 771.9
GTEX-YB5K-1126-SM-H6Q6O 40-49 years, female 757.4
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 725.5
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 708.5
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 699.4
GTEX-ZPU1-1826-SM-GNTB3 40-49 years, male 670.1
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 668.6
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 663.9
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 644.1
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 622.9
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 622.2
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 591.2
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 559.7
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 545.0
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 517.1
GTEX-13111-1426-SM-5DUW3 50-59 years, male 454.5
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 447.3
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 429.8
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 422.5
GTEX-XPT6-1026-SM-GOQYN 20-29 years, male 419.9
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 401.7
GTEX-W5X1-1926-SM-GOQYX 40-49 years, female 380.0
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 358.5
GTEX-1RQED-2826-SM-HLJQK 60-69 years, male 302.7
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 301.0
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 300.1
GTEX-WHPG-1826-SM-GNTAH 50-59 years, male 288.7
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 281.4
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 258.7
GTEX-YJ8A-2126-SM-GQ1C7 20-29 years, male 255.7
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 243.9
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 242.1
GTEX-U8XE-2226-SM-HAUZQ 30-39 years, male 241.5
GTEX-X3Y1-1526-SM-H6Q6X 40-49 years, male 234.0
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 208.9
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 188.0
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 186.0
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 157.0
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 155.8
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 146.4
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 145.2
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 144.7
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 143.9
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 138.3
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 132.3
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 128.1
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 124.2
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 123.4
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 115.6
GTEX-1PFEY-1326-SM-HK791 30-39 years, male 111.4
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 110.1
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 108.0
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 102.9
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 97.3
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 97.3
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 96.5
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 94.8
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 89.9
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 88.4
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 81.5
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 81.3
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 80.5
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 80.2
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 79.6
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 79.2
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 72.9
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 69.6
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 68.9
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 68.5
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 68.4
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 68.0
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 66.9
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 65.8
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 65.8
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 65.6
GTEX-1M5QR-2226-SM-HLJRV 40-49 years, male 64.9
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 64.3
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 63.7
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 63.1
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 59.7
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 58.6
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 54.3
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 52.8
GTEX-1MCYP-1626-SM-HLJQ5 20-29 years, female 51.3
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 49.9
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 49.9
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 49.7
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 49.5
GTEX-YFCO-1326-SM-664NV 40-49 years, male 49.4
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 48.6
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 48.5
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 48.0
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 46.2
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 45.0
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 44.7
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 43.0
GTEX-13113-1226-SM-5EGHT 60-69 years, female 42.5
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 42.1
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 42.0
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 41.9
GTEX-ZTSS-0926-SM-59865 40-49 years, male 41.3
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 41.1
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 40.8
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 40.4
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 40.4
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 40.2
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 39.4
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 39.1
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 38.3
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 38.2
GTEX-1MA7W-0726-SM-HLJQU 20-29 years, female 37.3
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 37.2
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 36.7
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 36.5
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 36.2
GTEX-14PKU-1626-SM-6871C 40-49 years, female 35.9
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 35.6
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 35.5
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 35.1
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 34.6
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 34.0
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 33.9
GTEX-144GM-1026-SM-5O9AZ 20-29 years, male 33.5
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 33.5
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 33.5
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 33.4
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 33.3
GTEX-1HSGN-2126-SM-GA8ZB 40-49 years, female 33.2
GTEX-13O61-1326-SM-5KM31 60-69 years, male 33.1
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 31.8
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 31.0
GTEX-1HKZK-2226-SM-GA91V 40-49 years, male 30.9
GTEX-1NHNU-2526-SM-HK79M 50-59 years, male 30.5
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 30.0
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 29.2
GTEX-1C475-1426-SM-793CH 40-49 years, female 29.1
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 29.1
GTEX-13X6H-1826-SM-5O9D1 50-59 years, female 28.6
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 28.4
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 27.9
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 27.8
GTEX-1HCUA-1726-SM-GA8Z2 50-59 years, female 27.8
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 27.6
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 27.3
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 27.1
GTEX-X4LF-1326-SM-HLJSD 50-59 years, male 26.9
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 26.8
GTEX-14PK6-1626-SM-6871I 70-79 years, female 25.9
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 25.9
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 25.8
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 25.7
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 24.3
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 24.1
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 23.7
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 23.2
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 22.7
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 22.5
GTEX-ZV7C-1426-SM-GNTB8 50-59 years, male 22.2
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 21.8
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 21.6
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 21.2
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 20.6
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 20.4
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 20.2
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 20.0
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 19.8
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 19.5
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 19.4
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 18.7
GTEX-1122O-1326-SM-5H11F 60-69 years, female 18.4
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 18.4
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 18.0
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 16.3
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 15.3
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 14.8
GTEX-ZT9X-1026-SM-HLJS2 40-49 years, male 14.6
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 14.5
GTEX-14PN3-2026-SM-68729 60-69 years, female 14.1
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 14.0
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 13.9
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 13.4
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 13.0
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 12.7
GTEX-1S831-1526-SM-HLJQS 20-29 years, male 12.5
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 12.2
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 11.7
GTEX-183FY-1626-SM-793D8 20-29 years, male 11.1
GTEX-1HBPN-1926-SM-GA91H 50-59 years, male 10.5
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 9.7
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 8.4
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 8.2
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 7.8
GTEX-111YS-1426-SM-5GID8 60-69 years, male 7.6
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 6.2
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 6.0
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 5.6
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

289.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 289.6
FF:10024-101D6 15,40,85 years, mixed 289.6

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