We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
HSPB6
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • HSPB6
TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:281.1 nTPM
GTEx:281.1 nTPM
FANTOM5:479.0 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA044153Antibody HPA054811Antibody CAB001974
Squamous epithelial cells Not detectedNot detectedNot detected





VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

281.1
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 281.1
Samples: 156

Max nTPM: 1548.2
Min nTPM: 12.2
Std nTPM: 225.5
Median nTPM: 228.5
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 1548.2
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 1027.7
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 930.1
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 874.4
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 829.3
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 829.0
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 741.1
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 731.9
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 647.9
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 638.8
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 624.1
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 618.2
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 594.4
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 593.4
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 576.0
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 549.0
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 547.4
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 539.8
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 537.4
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 523.7
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 522.3
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 503.0
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 493.1
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 490.0
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 478.5
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 472.2
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 470.7
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 466.3
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 445.1
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 426.6
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 421.6
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 409.9
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 409.3
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 408.7
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 406.9
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 403.3
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 398.8
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 393.2
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 383.8
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 381.7
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 369.5
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 365.9
GTEX-QCQG-1226-SM-48U23 50-59 years, female 354.3
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 352.7
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 340.1
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 333.3
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 332.4
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 330.8
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 326.0
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 324.3
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 322.8
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 318.0
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 314.4
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 302.5
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 302.1
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 299.4
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 297.2
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 294.7
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 292.4
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 291.1
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 279.9
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 279.5
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 277.4
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 274.3
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 268.9
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 265.6
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 264.3
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 251.9
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 248.8
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 247.7
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 246.6
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 245.7
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 245.6
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 243.3
GTEX-16NPV-2526-SM-6M483 50-59 years, female 236.6
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 235.5
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 231.3
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 229.1
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 227.8
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 223.4
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 222.8
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 222.2
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 219.8
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 217.4
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 215.6
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 211.7
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 209.5
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 209.2
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 207.3
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 200.1
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 199.1
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 198.8
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 187.6
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 179.1
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 177.5
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 171.4
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 170.1
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 169.2
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 168.1
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 167.7
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 166.6
GTEX-1C475-0526-SM-793AC 40-49 years, female 162.9
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 161.1
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 152.7
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 151.8
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 150.5
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 148.8
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 148.5
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 147.5
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 144.7
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 138.4
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 137.6
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 134.6
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 133.5
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 129.1
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 128.8
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 128.6
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 128.3
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 126.4
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 123.8
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 120.3
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 116.1
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 110.9
GTEX-14PKU-1326-SM-6871B 40-49 years, female 94.4
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 92.8
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 92.2
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 90.8
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 90.6
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 85.3
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 84.3
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 82.9
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 82.3
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 82.1
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 81.1
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 78.1
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 77.6
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 75.6
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 74.1
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 73.6
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 71.9
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 69.1
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 62.5
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 59.2
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 47.3
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 44.6
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 36.2
GTEX-S341-1226-SM-4AD5S 40-49 years, female 36.2
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 35.8
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 30.3
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 23.3
GTEX-11I78-2026-SM-5987C 50-59 years, female 22.9
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 21.9
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 21.8
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 19.8
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 15.0
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 12.2
Show allShow less

VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

479.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 479.0
FF:10204-103F6 68 years, female 479.0

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org