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  • NDUFAB1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:154.0 nTPM
HPA Brain:57.0 nTPM
GTEx:154.0 nTPM
FANTOM5:77.6 Scaled Tags Per Million
Pig:19.8 nTPM
Mouse:159.9 nTPM
Allen mouse:1.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

57.0
Sample id Sample description nTPM
Amygdala
nTPM: 57.0
2814 Male, age 76, right hemisphere 70.9
2514 Male, age 75, right hemisphere 58.2
1987 Female, age 91, left hemisphere 55.9
2517 Female, age 94, left hemisphere 54.7
2695 Female, age 67, right hemisphere 45.2
Basal amygdala
nTPM: 46.5
2110 Male, age 80, left hemisphere 55.2
2243 Female, age 91, right hemisphere 54.7
2685 Female, age 94, left hemisphere 47.2
2609 Male, age 75, right hemisphere 46.1
1955 Male, age 76, both hemispheres 45.5
2827 Female, age 67, right hemisphere 30.6
Central amygdala
nTPM: 54.0
1905 Male, age 76, both hemispheres 65.3
2826 Female, age 94, left hemisphere 54.8
2239 Male, age 80, left hemisphere 52.7
2515 Male, age 75, right hemisphere 52.6
2701 Female, age 91, right hemisphere 44.7
Corticomedial amygdala
nTPM: 52.4
2829 Male, age 80, left hemisphere 65.0
2428 Male, age 75, right hemisphere 57.0
2242 Female, age 91, right hemisphere 56.8
2429 Female, age 94, left hemisphere 50.9
2240 Male, age 76, both hemispheres 49.7
2535 Female, age 67, right hemisphere 34.7
Lateral amygdala
nTPM: 46.0
1883 Male, age 76, both hemispheres 62.3
2534 Female, age 94, left hemisphere 55.7
2516 Male, age 75, right hemisphere 53.0
2255 Female, age 91, right hemisphere 39.2
2256 Male, age 80, left hemisphere 36.9
2830 Female, age 67, right hemisphere 28.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

154.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 154.0
Samples: 181

Max nTPM: 527.3
Min nTPM: 65.9
Std nTPM: 65.4
Median nTPM: 140.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 527.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 456.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 377.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 374.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 305.6
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 301.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 300.1
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 272.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 272.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 270.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 257.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 255.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 244.5
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 244.1
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 243.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 239.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 237.8
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 237.4
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 223.9
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 220.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 220.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 217.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 217.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 216.7
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 216.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 208.5
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 208.3
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 207.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 206.7
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 201.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 199.5
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 199.3
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 197.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 195.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 194.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 194.5
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 194.4
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 180.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 179.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 178.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 176.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 174.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 174.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 173.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 173.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 173.4
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 173.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 171.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 170.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 169.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 169.6
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 169.3
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 169.3
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 168.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 168.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 168.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 164.6
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 164.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 163.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 162.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 162.0
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 161.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 161.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 161.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 160.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 160.6
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 160.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 159.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 159.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 158.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 158.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 155.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 154.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 153.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 151.4
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 151.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 151.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 150.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 149.3
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 148.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 147.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 146.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 145.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 144.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 143.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 143.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 143.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 141.5
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 141.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 140.4
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 140.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 139.8
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 138.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 136.9
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 136.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 136.1
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 136.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 135.2
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 134.4
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 133.5
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 133.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 133.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 132.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 131.8
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 131.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 130.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 129.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 129.0
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 127.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 127.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 126.2
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 126.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 125.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 124.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 124.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 124.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 122.1
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 121.0
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 120.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 119.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 119.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 118.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 118.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 117.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 117.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 117.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 115.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 114.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 114.4
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 114.2
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 113.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 112.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 111.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 111.6
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 111.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 111.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 111.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 110.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 110.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 110.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 109.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 108.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 107.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 106.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 105.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 104.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 104.0
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 103.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 102.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 102.3
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 102.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 101.8
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 98.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 98.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 96.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 96.1
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 96.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 95.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 95.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 95.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 94.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 94.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 93.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 93.4
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 93.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 92.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 90.7
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 89.2
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 88.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 87.0
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 86.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 86.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 86.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 81.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 79.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 77.9
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 77.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 77.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 75.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 74.0
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 65.9
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

77.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 77.6
FF:10151-102I7 76 years, female 77.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

19.8
Pig sample Sample description nTPM
Amygdala
nTPM: 19.8
Samples: 4

Max nTPM: 27.5
Min nTPM: 15.4
Sample A Female 27.5
Sample B Female 17.3
Sample C Male 15.4
Sample D Male 19.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

159.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 159.8
Samples: 4

Max nTPM: 164.5
Min nTPM: 155.3
Sample A Male 157.7
Sample B Male 164.5
Sample C Female 161.8
Sample D Female 155.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

1.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 1.0
69174341 Antisense, RP_050329_02_B11, Mouse strain C57BL/6J (56 days, male) 1.0

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