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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:82.9 nTPM
HPA Brain:69.7 nTPM
GTEx:82.9 nTPM
FANTOM5:59.7 Scaled Tags Per Million
Pig:29.0 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

69.7
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 63.1
1981 Female, age 72, midline 85.2
2194 Female, age 79, both hemispheres 61.3
2565 Male, age 75, midline 60.8
2048 Male, age 55, midline 56.2
2816 Male, age 47, midline 51.9
Cervical spinal cord, dorsal horn
nTPM: 69.7
2173 Female, age 72, unknown 89.6
2069 Male, age 47, both hemispheres 83.3
2296 Male, age 66, both hemispheres 69.5
2297 Male, age 75, both hemispheres 62.5
2721 Male, age 90, both hemispheres 57.1
1877 Male, age 55, unknown 56.4
Cervical spinal cord, ventral horn
nTPM: 62.2
2068 Male, age 55, unknown 76.0
2098 Female, age 72, unknown 73.5
2480 Male, age 75, both hemispheres 63.3
2809 Male, age 90, both hemispheres 60.5
2295 Male, age 66, both hemispheres 50.1
2820 Female, age 79, both hemispheres 50.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

82.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 82.9
Samples: 159

Max nTPM: 158.9
Min nTPM: 45.0
Std nTPM: 19.4
Median nTPM: 79.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 158.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 153.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 148.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 146.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 127.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 122.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 121.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 120.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 116.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 115.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 115.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 112.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 112.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 112.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 112.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 108.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 108.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 107.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 105.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 103.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 103.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 102.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 101.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 101.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 100.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 98.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 98.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 98.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 98.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 97.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 96.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 96.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 95.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 95.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 95.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 95.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 94.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 94.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 94.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 93.4
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 92.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 92.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 90.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 89.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 89.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 88.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 88.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 87.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 86.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 86.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 86.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 86.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 85.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 85.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 85.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 85.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 85.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 85.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 84.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 84.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 84.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 83.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 82.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 82.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 82.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 82.3
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 82.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 82.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 81.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 81.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 81.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 80.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 80.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 80.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 80.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 80.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 80.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 80.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 79.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 79.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 79.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 79.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 79.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 78.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 78.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 78.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 78.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 78.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 77.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 76.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 76.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 76.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 75.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 75.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 75.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 75.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 75.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 75.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 74.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 74.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 74.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 74.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 74.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 73.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 73.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 73.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 73.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 72.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 72.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 72.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 71.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 71.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 71.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 70.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 70.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 69.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 69.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 69.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 69.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 69.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 68.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 68.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 68.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 68.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 68.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 68.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 68.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 67.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 67.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 67.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 67.3
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 67.0
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 66.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 66.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 66.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 66.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 65.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 65.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 65.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 64.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 64.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 62.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 61.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 61.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 61.1
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 60.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 60.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 60.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 60.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 59.5
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 59.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 58.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 58.2
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 58.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 57.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 55.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 52.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 49.8
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 45.0
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

59.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 59.7
FF:10181-103D1 60 years, female 79.1
FF:10159-103A6 76 years, female 40.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

29.0
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 23.4
Samples: 4

Max nTPM: 26.4
Min nTPM: 20.4
Sample A Female 26.4
Sample B Female 20.4
Sample C Male 21.6
Sample D Male 25.2
Ventral spinal cord
nTPM: 29.0
Samples: 4

Max nTPM: 33.5
Min nTPM: 23.5
Sample A Female 28.1
Sample B Female 33.5
Sample C Male 30.8
Sample D Male 23.5

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