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SLC25A5
HPA
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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • SLC25A5
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:161.1 nTPM
FANTOM5:103.8 Scaled Tags Per Million
Pig:102.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA071684
Glial cells Low
Neuronal cells Low

CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

161.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 161.1
Samples: 300

Max nTPM: 448.9
Min nTPM: 79.9
Std nTPM: 41.5
Median nTPM: 156.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 448.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 305.6
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 274.9
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 273.2
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 271.5
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 270.5
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 261.8
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 261.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 248.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 246.8
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 240.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 239.7
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 239.5
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 238.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 237.7
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 235.1
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 229.8
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 224.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 224.5
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 223.4
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 222.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 222.7
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 222.7
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 221.7
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 220.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 220.0
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 216.8
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 215.9
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 213.1
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 212.2
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 211.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 211.2
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 209.5
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 208.0
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 205.1
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 204.0
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 203.3
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 201.7
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 201.1
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 200.8
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 199.5
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 199.2
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 198.5
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 198.4
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 197.5
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 197.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 196.4
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 195.6
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 195.0
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 193.7
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 193.3
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 193.0
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 192.3
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 191.6
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 191.5
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 189.9
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 189.5
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 189.0
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 188.6
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 188.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 187.8
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 186.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 186.5
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 186.3
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 185.5
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 185.4
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 185.2
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 185.2
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 184.9
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 184.5
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 184.4
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 183.4
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 183.4
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 182.6
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 182.2
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 181.4
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 181.3
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 180.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 180.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 179.4
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 178.9
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 178.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 178.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 178.0
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 177.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 177.3
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 177.2
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 176.5
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 176.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 176.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 176.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 175.9
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 175.8
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 175.8
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 174.9
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 174.7
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 174.6
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 173.5
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 173.1
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 172.8
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 172.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 172.3
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 171.7
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 171.0
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 170.8
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 170.5
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 170.0
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 169.7
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 169.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 169.3
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 168.9
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 168.9
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 168.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 168.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 168.2
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 167.4
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 167.3
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 167.3
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 167.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 167.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 166.7
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 166.4
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 166.2
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 165.7
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 165.4
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 164.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 164.5
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 164.1
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 164.0
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 163.8
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 163.5
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 163.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 163.2
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 162.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 162.7
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 162.7
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 161.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 161.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 159.8
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 159.8
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 159.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 159.0
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 159.0
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 158.4
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 158.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 157.5
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 157.5
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 157.3
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 157.2
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 157.1
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 156.7
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 156.7
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 156.7
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 156.6
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 156.6
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 155.7
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 155.5
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 155.2
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 154.1
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 153.3
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 152.9
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 152.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 152.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 151.6
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 151.5
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 151.4
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 151.1
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 150.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 150.8
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 150.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 150.1
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 149.6
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 149.5
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 149.3
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 148.3
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 148.1
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 147.7
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 147.6
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 147.4
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 147.3
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 147.2
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 147.1
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 146.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 145.9
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 145.0
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 144.1
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 143.8
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 143.7
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 143.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 143.4
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 143.2
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 142.7
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 142.5
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 142.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 141.5
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 141.4
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 141.2
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 140.9
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 140.6
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 140.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 140.2
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 140.1
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 139.8
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 139.8
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 139.8
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 139.7
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 138.9
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 137.7
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 137.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 137.2
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 137.0
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 136.7
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 136.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 136.5
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 136.3
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 135.5
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 134.4
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 134.1
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 134.1
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 133.8
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 133.5
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 133.2
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 133.2
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 133.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 133.0
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 133.0
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 132.7
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 132.6
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 132.5
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 132.2
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 132.2
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 132.2
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 131.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 130.9
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 130.4
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 129.6
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 129.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 129.6
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 129.2
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 128.6
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 128.3
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 128.1
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 128.0
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 127.5
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 127.5
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 127.1
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 126.6
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 126.5
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 126.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 126.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 125.5
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 125.3
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 125.2
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 125.0
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 124.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 123.5
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 123.2
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 123.1
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 122.7
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 121.7
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 120.7
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 120.1
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 119.7
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 119.3
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 119.1
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 117.0
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 116.0
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 114.9
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 114.8
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 114.6
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 114.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 114.1
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 113.4
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 113.2
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 113.1
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 112.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 111.0
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 109.9
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 109.4
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 109.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 109.2
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 108.9
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 107.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 106.5
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 106.1
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 103.9
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 103.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 102.4
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 100.4
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 100.0
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 99.8
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 99.7
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 99.3
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 96.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 92.8
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 92.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 90.4
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 90.0
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 88.7
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 79.9
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

103.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 103.8
FF:10164-103B2 76 years, female 103.8

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

102.0
Pig sample Sample description nTPM
Caudate
nTPM: 102.0
Samples: 4

Max nTPM: 125.7
Min nTPM: 77.4
Sample A Female 77.4
Sample B Female 107.2
Sample C Male 125.7
Sample D Male 97.5

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