We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
SLC25A5
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • SLC25A5
TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
Tissue methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:149.9 nTPM
HPA Brain:96.7 nTPM
GTEx:149.9 nTPM
FANTOM5:101.7 Scaled Tags Per Million
Pig:61.8 nTPM
Mouse:389.7 nTPM
Allen mouse:8.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

96.7
Sample id Sample description nTPM
Amygdala
nTPM: 96.7
2814 Male, age 76, right hemisphere 134.8
2514 Male, age 75, right hemisphere 100.3
2695 Female, age 67, right hemisphere 98.4
1987 Female, age 91, left hemisphere 77.5
2517 Female, age 94, left hemisphere 72.6
Basal amygdala
nTPM: 66.1
2609 Male, age 75, right hemisphere 102.2
1955 Male, age 76, both hemispheres 75.2
2110 Male, age 80, left hemisphere 67.5
2243 Female, age 91, right hemisphere 58.0
2685 Female, age 94, left hemisphere 54.4
2827 Female, age 67, right hemisphere 39.6
Central amygdala
nTPM: 77.2
1905 Male, age 76, both hemispheres 123.2
2515 Male, age 75, right hemisphere 86.8
2826 Female, age 94, left hemisphere 68.1
2239 Male, age 80, left hemisphere 55.7
2701 Female, age 91, right hemisphere 52.4
Corticomedial amygdala
nTPM: 67.4
2428 Male, age 75, right hemisphere 101.6
2429 Female, age 94, left hemisphere 71.9
2829 Male, age 80, left hemisphere 67.7
2240 Male, age 76, both hemispheres 62.9
2242 Female, age 91, right hemisphere 57.8
2535 Female, age 67, right hemisphere 42.5
Lateral amygdala
nTPM: 70.6
1883 Male, age 76, both hemispheres 105.9
2516 Male, age 75, right hemisphere 103.9
2534 Female, age 94, left hemisphere 65.2
2255 Female, age 91, right hemisphere 52.8
2830 Female, age 67, right hemisphere 48.3
2256 Male, age 80, left hemisphere 47.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

149.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 149.9
Samples: 181

Max nTPM: 295.7
Min nTPM: 70.7
Std nTPM: 40.4
Median nTPM: 144.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 295.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 278.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 261.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 253.4
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 244.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 240.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 235.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 234.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 232.4
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 228.0
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 226.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 225.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 221.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 215.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 211.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 205.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 204.8
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 204.2
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 201.4
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 200.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 200.1
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 199.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 199.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 196.1
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 194.8
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 192.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 192.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 188.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 186.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 185.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 185.0
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 184.4
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 182.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 179.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 179.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 178.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 178.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 178.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 176.8
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 176.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 175.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 174.8
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 173.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 171.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 171.1
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 170.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 170.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 169.3
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 169.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 169.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 167.7
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 165.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 165.3
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 163.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 162.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 162.5
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 162.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 162.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 162.0
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 161.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 161.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 160.8
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 160.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 160.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 160.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 158.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 158.1
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 157.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 157.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 157.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 157.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 156.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 155.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 154.5
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 154.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 154.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 153.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 153.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 153.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 152.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 152.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 152.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 149.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 148.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 148.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 147.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 146.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 146.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 145.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 144.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 144.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 143.2
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 142.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 142.2
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 141.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 141.2
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 140.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 140.4
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 140.3
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 140.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 139.3
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 138.6
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 137.9
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 137.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 136.9
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 136.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 136.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 135.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 135.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 135.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 134.6
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 134.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 133.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 133.7
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 133.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 133.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 132.0
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 131.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 130.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 130.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 130.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 129.8
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 128.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 128.0
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 127.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 127.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 126.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 125.7
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 125.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 124.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 124.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 123.0
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 122.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 122.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 121.7
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 121.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 121.3
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 120.1
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 118.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 117.8
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 117.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 117.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 117.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 116.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 116.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 116.2
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 115.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 114.8
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 114.6
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 113.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 112.1
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 110.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 109.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 109.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 107.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 105.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 105.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 105.2
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 105.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 104.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 104.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 103.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 102.8
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 102.8
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 102.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 102.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 101.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 101.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 101.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 100.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 100.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 98.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 94.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 93.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 88.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 85.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 83.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 80.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 78.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 75.2
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 70.7
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

101.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 101.7
FF:10151-102I7 76 years, female 101.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

61.8
Pig sample Sample description nTPM
Amygdala
nTPM: 61.8
Samples: 4

Max nTPM: 72.1
Min nTPM: 52.8
Sample A Female 72.1
Sample B Female 67.5
Sample C Male 52.8
Sample D Male 54.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

389.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 389.7
Samples: 4

Max nTPM: 403.7
Min nTPM: 376.3
Sample A Male 391.0
Sample B Male 387.6
Sample C Female 403.7
Sample D Female 376.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

8.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 8.6
2591 Antisense, RP_040507_01_D05, Mouse strain C57BL/6J (56 days, male) 8.6
2592 Antisense, RP_040507_01_D05, Mouse strain C57BL/6J (56 days, male) 6.5

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org