A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
51.0
nTPM
Monaco:
129.0
nTPM
Schmiedel:
91.2
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
51.0
HPA sample
nTPM
Memory B-cell nTPM: 43.7
Samples: 6
Max nTPM: 98.3
Min nTPM: 18.8
P10809_1017
35.3
P10809_1025
39.1
P10809_1044
98.3
P10809_1063
18.8
P10809_1092
49.9
P10809_1105
20.9
Naive B-cell nTPM: 51.0
Samples: 6
Max nTPM: 163.8
Min nTPM: 11.3
P10809_1011
25.3
P10809_1029
39.0
P10809_1048
163.8
P10809_1067
11.3
P10809_1091
38.2
P10809_1104
28.5
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
129.0
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 90.1
Samples: 4
Max nTPM: 107.6
Min nTPM: 68.2
RHH5310_R3677
84.6
RHH5218_R3590
68.2
RHH5247_R3619
107.6
RHH5276_R3648
100.1
Naive B-cell nTPM: 75.5
Samples: 4
Max nTPM: 94.1
Min nTPM: 42.2
RHH5308_R3675
89.4
RHH5216_R3588
42.2
RHH5245_R3617
76.2
RHH5274_R3646
94.1
Non-switched memory B-cell nTPM: 77.3
Samples: 4
Max nTPM: 101.9
Min nTPM: 57.9
RHH5309_R3676
76.8
RHH5217_R3589
57.9
RHH5246_R3618
101.9
RHH5275_R3647
72.4
Plasmablast nTPM: 129.0
Samples: 4
Max nTPM: 184.1
Min nTPM: 70.3
RHH5312_R3679
70.3
RHH5220_R3592
152.4
RHH5249_R3621
184.1
RHH5278_R3650
109.2
Switched memory B-cell nTPM: 84.1
Samples: 4
Max nTPM: 127.6
Min nTPM: 56.0
RHH5311_R3678
56.0
RHH5219_R3591
127.6
RHH5248_R3620
58.9
RHH5277_R3649
93.7
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
91.2
Schmiedel sample id
TPM
Naive B-cell TPM: 91.2
Samples: 91
Max TPM: 139.8
Min TPM: 51.8
B_CELL_NAIVE_1
139.8
B_CELL_NAIVE_2
131.7
B_CELL_NAIVE_3
127.6
B_CELL_NAIVE_4
127.2
B_CELL_NAIVE_5
125.3
B_CELL_NAIVE_6
117.4
B_CELL_NAIVE_7
116.1
B_CELL_NAIVE_8
113.0
B_CELL_NAIVE_9
108.7
B_CELL_NAIVE_10
108.2
B_CELL_NAIVE_11
107.5
B_CELL_NAIVE_12
106.8
B_CELL_NAIVE_13
106.8
B_CELL_NAIVE_14
105.9
B_CELL_NAIVE_15
105.7
B_CELL_NAIVE_16
105.6
B_CELL_NAIVE_17
104.4
B_CELL_NAIVE_18
104.0
B_CELL_NAIVE_19
101.1
B_CELL_NAIVE_20
100.6
B_CELL_NAIVE_21
99.6
B_CELL_NAIVE_22
98.8
B_CELL_NAIVE_23
97.9
B_CELL_NAIVE_24
97.4
B_CELL_NAIVE_25
97.0
B_CELL_NAIVE_26
96.4
B_CELL_NAIVE_27
96.0
B_CELL_NAIVE_28
96.0
B_CELL_NAIVE_29
95.9
B_CELL_NAIVE_30
95.6
B_CELL_NAIVE_31
95.3
B_CELL_NAIVE_32
95.2
B_CELL_NAIVE_33
94.4
B_CELL_NAIVE_34
94.2
B_CELL_NAIVE_35
94.2
B_CELL_NAIVE_36
94.1
B_CELL_NAIVE_37
93.3
B_CELL_NAIVE_38
92.1
B_CELL_NAIVE_39
91.8
B_CELL_NAIVE_40
91.4
B_CELL_NAIVE_41
91.2
B_CELL_NAIVE_42
90.9
B_CELL_NAIVE_43
90.9
B_CELL_NAIVE_44
90.6
B_CELL_NAIVE_45
90.5
B_CELL_NAIVE_46
90.4
B_CELL_NAIVE_47
90.2
B_CELL_NAIVE_48
89.1
B_CELL_NAIVE_49
88.7
B_CELL_NAIVE_50
88.6
B_CELL_NAIVE_51
88.1
B_CELL_NAIVE_52
87.7
B_CELL_NAIVE_53
87.6
B_CELL_NAIVE_54
87.5
B_CELL_NAIVE_55
87.0
B_CELL_NAIVE_56
86.9
B_CELL_NAIVE_57
86.2
B_CELL_NAIVE_58
85.6
B_CELL_NAIVE_59
85.1
B_CELL_NAIVE_60
84.9
B_CELL_NAIVE_61
84.6
B_CELL_NAIVE_62
83.4
B_CELL_NAIVE_63
83.1
B_CELL_NAIVE_64
82.9
B_CELL_NAIVE_65
82.3
B_CELL_NAIVE_66
81.3
B_CELL_NAIVE_67
81.3
B_CELL_NAIVE_68
81.1
B_CELL_NAIVE_69
80.8
B_CELL_NAIVE_70
79.9
B_CELL_NAIVE_71
79.4
B_CELL_NAIVE_72
79.3
B_CELL_NAIVE_73
79.3
B_CELL_NAIVE_74
79.1
B_CELL_NAIVE_75
77.8
B_CELL_NAIVE_76
77.5
B_CELL_NAIVE_77
77.4
B_CELL_NAIVE_78
76.5
B_CELL_NAIVE_79
75.6
B_CELL_NAIVE_80
75.5
B_CELL_NAIVE_81
75.5
B_CELL_NAIVE_82
75.5
B_CELL_NAIVE_83
74.2
B_CELL_NAIVE_84
73.5
B_CELL_NAIVE_85
73.1
B_CELL_NAIVE_86
72.3
B_CELL_NAIVE_87
69.4
B_CELL_NAIVE_88
68.1
B_CELL_NAIVE_89
65.9
B_CELL_NAIVE_90
60.2
B_CELL_NAIVE_91
51.8
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The Human Protein Atlas project is funded
