A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
51.5
nTPM
Monaco:
126.5
nTPM
Schmiedel:
72.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
51.5
HPA sample
nTPM
Classical monocyte nTPM: 51.5
Samples: 6
Max nTPM: 107.7
Min nTPM: 29.5
P10809_1003
39.1
P10809_1020
44.7
P10809_1039
107.7
P10809_1058
29.5
P10809_1080
30.1
P10809_1107
57.8
Intermediate monocyte nTPM: 32.2
Samples: 6
Max nTPM: 59.7
Min nTPM: 16.7
P10809_1004
34.6
P10809_1023
28.6
P10809_1042
35.9
P10809_1061
17.6
P10809_1081
16.7
P10809_1108
59.7
Non-classical monocyte nTPM: 24.5
Samples: 5
Max nTPM: 40.7
Min nTPM: 13.2
P10809_1005
33.2
P10809_1053
13.2
P10809_1072
16.5
P10809_1082
19.0
P10809_1109
40.7
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
126.5
Monaco sample
nTPM
Classical monocyte nTPM: 126.6
Samples: 4
Max nTPM: 149.8
Min nTPM: 97.4
RHH5313_R3680
97.4
RHH5221_R3593
149.8
RHH5250_R3622
126.4
RHH5279_R3651
132.6
Intermediate monocyte nTPM: 100.4
Samples: 4
Max nTPM: 118.1
Min nTPM: 89.8
RHH5314_R3681
118.1
RHH5222_R3594
95.2
RHH5251_R3623
98.6
RHH5280_R3652
89.8
Non-classical monocyte nTPM: 69.8
Samples: 4
Max nTPM: 75.1
Min nTPM: 66.5
RHH5315_R3682
68.8
RHH5223_R3595
75.1
RHH5252_R3624
66.5
RHH5281_R3653
68.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
72.2
Schmiedel sample id
TPM
Classical monocyte TPM: 72.2
Samples: 91
Max TPM: 97.1
Min TPM: 56.7
MONOCYTES_1
97.1
MONOCYTES_2
89.9
MONOCYTES_3
89.0
MONOCYTES_4
87.4
MONOCYTES_5
87.3
MONOCYTES_6
87.2
MONOCYTES_7
86.8
MONOCYTES_8
86.0
MONOCYTES_9
83.0
MONOCYTES_10
80.4
MONOCYTES_11
80.4
MONOCYTES_12
80.4
MONOCYTES_13
80.3
MONOCYTES_14
80.2
MONOCYTES_15
79.6
MONOCYTES_16
79.0
MONOCYTES_17
79.0
MONOCYTES_18
79.0
MONOCYTES_19
78.8
MONOCYTES_20
78.8
MONOCYTES_21
78.4
MONOCYTES_22
78.2
MONOCYTES_23
78.0
MONOCYTES_24
77.5
MONOCYTES_25
77.2
MONOCYTES_26
77.1
MONOCYTES_27
77.0
MONOCYTES_28
76.8
MONOCYTES_29
76.4
MONOCYTES_30
76.3
MONOCYTES_31
75.8
MONOCYTES_32
75.4
MONOCYTES_33
74.9
MONOCYTES_34
74.9
MONOCYTES_35
74.8
MONOCYTES_36
74.4
MONOCYTES_37
74.3
MONOCYTES_38
73.9
MONOCYTES_39
73.1
MONOCYTES_40
72.6
MONOCYTES_41
72.3
MONOCYTES_42
72.3
MONOCYTES_43
72.1
MONOCYTES_44
72.1
MONOCYTES_45
71.7
MONOCYTES_46
71.3
MONOCYTES_47
70.9
MONOCYTES_48
70.5
MONOCYTES_49
70.4
MONOCYTES_50
70.3
MONOCYTES_51
70.1
MONOCYTES_52
69.9
MONOCYTES_53
69.7
MONOCYTES_54
69.7
MONOCYTES_55
69.3
MONOCYTES_56
68.8
MONOCYTES_57
68.8
MONOCYTES_58
68.2
MONOCYTES_59
68.1
MONOCYTES_60
68.0
MONOCYTES_61
67.9
MONOCYTES_62
67.7
MONOCYTES_63
67.6
MONOCYTES_64
67.6
MONOCYTES_65
66.9
MONOCYTES_66
66.8
MONOCYTES_67
66.6
MONOCYTES_68
66.2
MONOCYTES_69
66.1
MONOCYTES_70
66.1
MONOCYTES_71
65.8
MONOCYTES_72
65.8
MONOCYTES_73
65.6
MONOCYTES_74
65.5
MONOCYTES_75
65.3
MONOCYTES_76
65.1
MONOCYTES_77
64.3
MONOCYTES_78
64.1
MONOCYTES_79
63.0
MONOCYTES_80
62.6
MONOCYTES_81
62.1
MONOCYTES_82
62.0
MONOCYTES_83
61.8
MONOCYTES_84
60.8
MONOCYTES_85
60.2
MONOCYTES_86
59.6
MONOCYTES_87
59.4
MONOCYTES_88
59.3
MONOCYTES_89
58.3
MONOCYTES_90
57.8
MONOCYTES_91
56.7
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Non-classical monocyte TPM: 58.8
Samples: 90
Max TPM: 90.3
Min TPM: 38.1
M2_1
90.3
M2_2
82.8
M2_3
80.6
M2_4
79.7
M2_5
78.9
M2_6
78.2
M2_7
76.9
M2_8
74.7
M2_9
74.7
M2_10
73.2
M2_11
72.6
M2_12
71.1
M2_13
70.6
M2_14
69.8
M2_15
69.7
M2_16
69.2
M2_17
68.7
M2_18
68.1
M2_19
67.5
M2_20
67.4
M2_21
67.0
M2_22
66.2
M2_23
63.4
M2_24
62.5
M2_25
62.5
M2_26
62.4
M2_27
62.3
M2_28
61.5
M2_29
61.4
M2_30
61.1
M2_31
61.1
M2_32
60.0
M2_33
60.0
M2_34
60.0
M2_35
59.8
M2_36
59.7
M2_37
59.4
M2_38
59.1
M2_39
59.0
M2_40
59.0
M2_41
58.2
M2_42
57.9
M2_43
57.7
M2_44
57.4
M2_45
57.3
M2_46
57.3
M2_47
57.2
M2_48
56.9
M2_49
56.7
M2_50
56.6
M2_51
56.6
M2_52
56.4
M2_53
55.6
M2_54
55.5
M2_55
55.0
M2_56
55.0
M2_57
54.6
M2_58
54.5
M2_59
54.3
M2_60
53.6
M2_61
53.4
M2_62
53.2
M2_63
52.5
M2_64
52.4
M2_65
52.1
M2_66
52.0
M2_67
51.7
M2_68
51.6
M2_69
51.6
M2_70
51.2
M2_71
51.1
M2_72
51.0
M2_73
50.7
M2_74
50.5
M2_75
50.3
M2_76
50.1
M2_77
50.1
M2_78
49.2
M2_79
48.8
M2_80
48.3
M2_81
47.5
M2_82
46.2
M2_83
44.2
M2_84
43.9
M2_85
43.3
M2_86
42.9
M2_87
42.8
M2_88
41.7
M2_89
41.5
M2_90
38.1
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