A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
12.5
nTPM
Monaco:
78.8
nTPM
Schmiedel:
46.3
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
12.5
HPA sample
nTPM
Memory B-cell nTPM: 8.2
Samples: 6
Max nTPM: 11.6
Min nTPM: 0.0
P10809_1017
11.6
P10809_1025
9.6
P10809_1044
0.0
P10809_1063
11.3
P10809_1092
9.7
P10809_1105
7.1
Naive B-cell nTPM: 12.5
Samples: 6
Max nTPM: 20.1
Min nTPM: 6.3
P10809_1011
20.1
P10809_1029
13.6
P10809_1048
6.3
P10809_1067
8.4
P10809_1091
14.9
P10809_1104
11.6
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
78.8
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 56.2
Samples: 4
Max nTPM: 63.6
Min nTPM: 46.3
RHH5310_R3677
56.0
RHH5218_R3590
58.8
RHH5247_R3619
46.3
RHH5276_R3648
63.6
Naive B-cell nTPM: 78.8
Samples: 4
Max nTPM: 102.9
Min nTPM: 67.5
RHH5308_R3675
74.9
RHH5216_R3588
67.5
RHH5245_R3617
69.9
RHH5274_R3646
102.9
Non-switched memory B-cell nTPM: 56.4
Samples: 4
Max nTPM: 65.9
Min nTPM: 48.2
RHH5309_R3676
65.9
RHH5217_R3589
57.3
RHH5246_R3618
54.2
RHH5275_R3647
48.2
Plasmablast nTPM: 43.7
Samples: 4
Max nTPM: 52.4
Min nTPM: 35.2
RHH5312_R3679
52.4
RHH5220_R3592
35.2
RHH5249_R3621
43.9
RHH5278_R3650
43.4
Switched memory B-cell nTPM: 62.0
Samples: 4
Max nTPM: 69.9
Min nTPM: 54.5
RHH5311_R3678
69.9
RHH5219_R3591
54.5
RHH5248_R3620
60.0
RHH5277_R3649
63.4
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
46.3
Schmiedel sample id
TPM
Naive B-cell TPM: 46.3
Samples: 91
Max TPM: 94.3
Min TPM: 8.3
B_CELL_NAIVE_1
94.3
B_CELL_NAIVE_2
92.2
B_CELL_NAIVE_3
80.1
B_CELL_NAIVE_4
77.9
B_CELL_NAIVE_5
77.7
B_CELL_NAIVE_6
77.2
B_CELL_NAIVE_7
76.8
B_CELL_NAIVE_8
76.2
B_CELL_NAIVE_9
74.9
B_CELL_NAIVE_10
74.2
B_CELL_NAIVE_11
73.9
B_CELL_NAIVE_12
73.4
B_CELL_NAIVE_13
71.8
B_CELL_NAIVE_14
70.3
B_CELL_NAIVE_15
68.1
B_CELL_NAIVE_16
67.1
B_CELL_NAIVE_17
67.0
B_CELL_NAIVE_18
65.1
B_CELL_NAIVE_19
63.8
B_CELL_NAIVE_20
62.0
B_CELL_NAIVE_21
61.3
B_CELL_NAIVE_22
60.7
B_CELL_NAIVE_23
60.6
B_CELL_NAIVE_24
59.8
B_CELL_NAIVE_25
59.8
B_CELL_NAIVE_26
59.3
B_CELL_NAIVE_27
55.6
B_CELL_NAIVE_28
55.4
B_CELL_NAIVE_29
54.8
B_CELL_NAIVE_30
54.8
B_CELL_NAIVE_31
53.9
B_CELL_NAIVE_32
53.6
B_CELL_NAIVE_33
52.8
B_CELL_NAIVE_34
52.6
B_CELL_NAIVE_35
52.5
B_CELL_NAIVE_36
50.9
B_CELL_NAIVE_37
50.7
B_CELL_NAIVE_38
50.2
B_CELL_NAIVE_39
49.2
B_CELL_NAIVE_40
49.2
B_CELL_NAIVE_41
49.1
B_CELL_NAIVE_42
49.1
B_CELL_NAIVE_43
48.9
B_CELL_NAIVE_44
48.4
B_CELL_NAIVE_45
47.8
B_CELL_NAIVE_46
47.3
B_CELL_NAIVE_47
47.1
B_CELL_NAIVE_48
46.8
B_CELL_NAIVE_49
45.8
B_CELL_NAIVE_50
45.6
B_CELL_NAIVE_51
44.8
B_CELL_NAIVE_52
44.6
B_CELL_NAIVE_53
43.5
B_CELL_NAIVE_54
42.9
B_CELL_NAIVE_55
42.3
B_CELL_NAIVE_56
42.2
B_CELL_NAIVE_57
39.8
B_CELL_NAIVE_58
37.2
B_CELL_NAIVE_59
36.0
B_CELL_NAIVE_60
35.8
B_CELL_NAIVE_61
35.1
B_CELL_NAIVE_62
34.9
B_CELL_NAIVE_63
34.7
B_CELL_NAIVE_64
34.4
B_CELL_NAIVE_65
33.3
B_CELL_NAIVE_66
32.9
B_CELL_NAIVE_67
32.7
B_CELL_NAIVE_68
32.5
B_CELL_NAIVE_69
32.2
B_CELL_NAIVE_70
28.1
B_CELL_NAIVE_71
27.7
B_CELL_NAIVE_72
27.2
B_CELL_NAIVE_73
27.1
B_CELL_NAIVE_74
26.3
B_CELL_NAIVE_75
26.1
B_CELL_NAIVE_76
25.7
B_CELL_NAIVE_77
25.3
B_CELL_NAIVE_78
24.7
B_CELL_NAIVE_79
21.7
B_CELL_NAIVE_80
21.7
B_CELL_NAIVE_81
19.7
B_CELL_NAIVE_82
19.0
B_CELL_NAIVE_83
18.3
B_CELL_NAIVE_84
17.6
B_CELL_NAIVE_85
17.5
B_CELL_NAIVE_86
16.5
B_CELL_NAIVE_87
14.8
B_CELL_NAIVE_88
11.7
B_CELL_NAIVE_89
11.3
B_CELL_NAIVE_90
10.6
B_CELL_NAIVE_91
8.3
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