A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
6.2
nTPM
Monaco:
34.5
nTPM
Schmiedel:
15.5
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
6.2
HPA sample
nTPM
NK-cell nTPM: 6.2
Samples: 6
Max nTPM: 11.7
Min nTPM: 1.0
P10809_1013
8.4
P10809_1033
9.1
P10809_1052
11.7
P10809_1071
5.3
P10809_1093
1.9
P10809_1103
1.0
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
34.5
Monaco sample
nTPM
NK-cell nTPM: 34.5
Samples: 4
Max nTPM: 44.5
Min nTPM: 25.4
RHH5316_R3683
30.3
RHH5224_R3596
44.5
RHH5253_R3625
25.4
RHH5282_R3654
37.9
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
15.5
Schmiedel sample id
TPM
NK-cell TPM: 15.5
Samples: 90
Max TPM: 31.3
Min TPM: 4.6
NK_1
31.3
NK_2
30.1
NK_3
27.6
NK_4
27.3
NK_5
26.8
NK_6
26.7
NK_7
26.6
NK_8
25.6
NK_9
24.9
NK_10
24.8
NK_11
23.1
NK_12
22.6
NK_13
21.2
NK_14
21.2
NK_15
21.0
NK_16
20.9
NK_17
20.8
NK_18
20.7
NK_19
20.5
NK_20
20.3
NK_21
19.8
NK_22
19.5
NK_23
19.4
NK_24
19.2
NK_25
19.2
NK_26
18.7
NK_27
18.3
NK_28
18.1
NK_29
18.0
NK_30
18.0
NK_31
17.7
NK_32
17.4
NK_33
17.2
NK_34
16.7
NK_35
16.6
NK_36
16.5
NK_37
16.4
NK_38
15.9
NK_39
15.9
NK_40
15.7
NK_41
15.7
NK_42
15.7
NK_43
15.5
NK_44
15.3
NK_45
15.0
NK_46
15.0
NK_47
15.0
NK_48
14.8
NK_49
14.6
NK_50
14.6
NK_51
14.6
NK_52
14.5
NK_53
14.5
NK_54
14.0
NK_55
13.7
NK_56
13.6
NK_57
13.5
NK_58
13.0
NK_59
12.7
NK_60
12.5
NK_61
11.8
NK_62
11.6
NK_63
11.5
NK_64
11.5
NK_65
11.4
NK_66
11.3
NK_67
11.3
NK_68
11.3
NK_69
11.2
NK_70
11.0
NK_71
10.3
NK_72
10.2
NK_73
9.8
NK_74
9.7
NK_75
9.0
NK_76
8.9
NK_77
8.7
NK_78
8.6
NK_79
8.3
NK_80
8.1
NK_81
7.9
NK_82
7.1
NK_83
7.0
NK_84
6.5
NK_85
6.3
NK_86
5.6
NK_87
5.0
NK_88
4.8
NK_89
4.7
NK_90
4.6
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