HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni
Consensus:22.4 nTPM
HPA Brain:25.8 nTPM
GTEx:22.4 nTPM
FANTOM5:14.3 Scaled Tags Per Million
Pig:19.2 nTPM
Mouse:17.0 nTPM
Allen mouse:1.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA048831Antibody HPA055751
Glial cells LowNot detected
Neuronal cells HighLow





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 25.8
Sample id Sample description nTPM
Hippocampus
nTPM: 25.8
2621 Female, age 67, right hemisphere 26.4
1855 Male, age 76, left hemisphere 26.1
2148 Female, age 91, left hemisphere 26.1
1898 Male, age 80, left hemisphere 25.6
1911 Female, age 85, right hemisphere 25.5
2529 Female, age 94, left hemisphere 25.2
Dentate gyrus
nTPM: 25.6
2530 Female, age 94, left hemisphere 29.4
1927 Female, age 91, both hemispheres 26.9
2010 Male, age 76, both hemispheres 26.2
2528 Male, age 74, both hemispheres 24.4
2246 Female, age 85, both hemispheres 23.7
2531 Female, age 67, both hemispheres 22.8
Entorhinal gyrus
nTPM: 23.8
2613 Female, age 94, left hemisphere 27.0
2686 Male, age 75, right hemisphere 26.1
2117 Female, age 91, right hemisphere 23.7
2764 Male, age 80, right hemisphere 22.5
1787 Male, age 76, left hemisphere 22.1
1938 Female, age 85, left hemisphere 21.7
Hippocampus, CA1
nTPM: 25.0
2749 Male, age 80, left hemisphere 29.8
1873 Female, age 85, both hemispheres 25.8
2527 Male, age 74, both hemispheres 25.7
2082 Female, age 91, right hemisphere 23.7
2045 Male, age 76, both hemispheres 20.2
Hippocampus, CA2
nTPM: 24.1
1963 Male, age 80, left hemisphere 27.3
2437 Female, age 94, left hemisphere 27.2
2113 Female, age 91, right hemisphere 24.5
2249 Male, age 74, both hemispheres 22.4
1892 Male, age 76, both hemispheres 22.1
1940 Female, age 85, left hemisphere 20.9
Hippocampus, CA3
nTPM: 24.7
2861 Female, age 67, both hemispheres 30.6
2137 Male, age 80, left hemisphere 26.2
2620 Female, age 94, left hemisphere 24.1
2436 Male, age 74, both hemispheres 23.3
1891 Female, age 85, both hemispheres 23.0
1867 Male, age 76, both hemispheres 21.2
Parahippocampal cortex
nTPM: 22.6
2245 Female, age 91, both hemispheres 26.7
2692 Male, age 74, both hemispheres 26.7
2622 Female, age 67, right hemisphere 23.7
2532 Female, age 72, left hemisphere 22.7
2693 Female, age 94, both hemispheres 21.5
1990 Female, age 91, right hemisphere 21.2
2018 Male, age 76, both hemispheres 21.1
1933 Female, age 85, both hemispheres 21.0
2250 Female, age 67, right hemisphere 21.0
1850 Male, age 80, both hemispheres 20.6
Perirhinal gyrus
nTPM: 21.6
2521 Female, age 94, right hemisphere 25.5
1847 Female, age 91, left hemisphere 24.8
1794 Male, age 80, right hemisphere 21.3
1841 Female, age 85, right hemisphere 19.6
2848 Male, age 76, right hemisphere 17.1
Subiculum
nTPM: 24.0
2042 Male, age 76, both hemispheres 26.4
2438 Female, age 94, left hemisphere 25.2
1901 Male, age 80, both hemispheres 23.9
2619 Male, age 74, both hemispheres 23.8
2729 Female, age 91, right hemisphere 23.4
1977 Female, age 85, both hemispheres 21.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 22.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 22.4
Samples: 255

Max nTPM: 59.6
Min nTPM: 11.3
Std nTPM: 5.4
Median nTPM: 21.5
GTEX-14E6C-0011-R1a-SM-G8W86 40-49 years, male 59.6
GTEX-1JJ6O-0011-R1b-SM-F2I2M 60-69 years, male 38.3
GTEX-1JJEA-0011-R1b-SM-F6495 60-69 years, male 37.5
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 35.2
GTEX-1O9I2-0011-R1a-SM-F2TAW 50-59 years, male 33.7
GTEX-1I19N-0011-R1b-SM-GOR1A 70-79 years, male 33.0
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 32.4
GTEX-1N2EF-0011-R1a-SM-F2TAT 60-69 years, male 32.4
GTEX-1PWST-0011-R1b-SM-F2I38 70-79 years, male 32.2
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 32.0
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 31.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 14.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 14.3
FF:10169-103B7 60 years, female 15.5
FF:10153-102I9 76 years, female 13.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 19.2
Pig sample Sample description nTPM
Subiculum
nTPM: 17.7
Samples: 4

Max nTPM: 19.5
Min nTPM: 16.7
Sample A Female 19.5
Sample B Female 16.8
Sample C Male 17.9
Sample D Male 16.7
Dorsal hippocampus
nTPM: 18.3
Samples: 4

Max nTPM: 23.0
Min nTPM: 14.6
Sample A Female 23.0
Sample B Female 18.7
Sample C Male 16.8
Sample D Male 14.6
Entorhinal cortex
nTPM: 16.6
Samples: 4

Max nTPM: 17.7
Min nTPM: 15.9
Sample A Female 16.7
Sample B Female 16.2
Sample C Male 17.7
Sample D Male 15.9
Ventral hippocampus
nTPM: 19.2
Samples: 4

Max nTPM: 22.2
Min nTPM: 15.8
Sample A Female 21.0
Sample B Female 15.8
Sample C Male 22.2
Sample D Male 17.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 17.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 15.9
Samples: 4

Max nTPM: 17.5
Min nTPM: 15.2
Sample A Male 15.2
Sample B Male 17.5
Sample C Female 15.6
Sample D Female 15.3
Hippocampal formation
nTPM: 17.0
Samples: 4

Max nTPM: 18.3
Min nTPM: 15.8
Sample A Male 17.4
Sample B Male 18.3
Sample C Female 15.8
Sample D Female 16.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 1.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.9
71808771 Antisense, RP_051005_01_B03, Mouse strain C57BL/6J (56 days, male) 1.9

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