A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
46.1
nTPM
Monaco:
64.8
nTPM
Schmiedel:
118.9
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
46.1
HPA sample
nTPM
Memory B-cell nTPM: 41.8
Samples: 6
Max nTPM: 48.4
Min nTPM: 30.4
P10809_1017
30.4
P10809_1025
48.4
P10809_1044
45.7
P10809_1063
45.9
P10809_1092
37.9
P10809_1105
42.7
Naive B-cell nTPM: 46.1
Samples: 6
Max nTPM: 76.1
Min nTPM: 28.2
P10809_1011
28.2
P10809_1029
53.6
P10809_1048
76.1
P10809_1067
40.3
P10809_1091
40.1
P10809_1104
38.4
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
64.8
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 58.2
Samples: 4
Max nTPM: 61.7
Min nTPM: 50.2
RHH5310_R3677
61.6
RHH5218_R3590
61.7
RHH5247_R3619
59.2
RHH5276_R3648
50.2
Naive B-cell nTPM: 64.8
Samples: 4
Max nTPM: 75.8
Min nTPM: 47.8
RHH5308_R3675
47.8
RHH5216_R3588
69.9
RHH5245_R3617
65.5
RHH5274_R3646
75.8
Non-switched memory B-cell nTPM: 53.5
Samples: 4
Max nTPM: 60.4
Min nTPM: 43.5
RHH5309_R3676
60.4
RHH5217_R3589
43.5
RHH5246_R3618
58.5
RHH5275_R3647
51.7
Plasmablast nTPM: 48.7
Samples: 4
Max nTPM: 61.1
Min nTPM: 33.4
RHH5312_R3679
56.0
RHH5220_R3592
61.1
RHH5249_R3621
33.4
RHH5278_R3650
44.3
Switched memory B-cell nTPM: 55.3
Samples: 4
Max nTPM: 69.3
Min nTPM: 33.6
RHH5311_R3678
33.6
RHH5219_R3591
60.9
RHH5248_R3620
69.3
RHH5277_R3649
57.4
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
118.9
Schmiedel sample id
TPM
Naive B-cell TPM: 118.9
Samples: 91
Max TPM: 154.7
Min TPM: 87.8
B_CELL_NAIVE_1
154.7
B_CELL_NAIVE_2
150.3
B_CELL_NAIVE_3
145.3
B_CELL_NAIVE_4
144.0
B_CELL_NAIVE_5
143.7
B_CELL_NAIVE_6
143.3
B_CELL_NAIVE_7
143.3
B_CELL_NAIVE_8
141.7
B_CELL_NAIVE_9
139.3
B_CELL_NAIVE_10
138.8
B_CELL_NAIVE_11
137.3
B_CELL_NAIVE_12
137.0
B_CELL_NAIVE_13
136.9
B_CELL_NAIVE_14
136.2
B_CELL_NAIVE_15
134.2
B_CELL_NAIVE_16
133.8
B_CELL_NAIVE_17
133.7
B_CELL_NAIVE_18
133.4
B_CELL_NAIVE_19
132.6
B_CELL_NAIVE_20
131.5
B_CELL_NAIVE_21
130.2
B_CELL_NAIVE_22
130.1
B_CELL_NAIVE_23
128.7
B_CELL_NAIVE_24
127.9
B_CELL_NAIVE_25
126.8
B_CELL_NAIVE_26
126.6
B_CELL_NAIVE_27
126.3
B_CELL_NAIVE_28
125.8
B_CELL_NAIVE_29
125.4
B_CELL_NAIVE_30
125.1
B_CELL_NAIVE_31
124.4
B_CELL_NAIVE_32
123.6
B_CELL_NAIVE_33
123.4
B_CELL_NAIVE_34
122.9
B_CELL_NAIVE_35
122.4
B_CELL_NAIVE_36
121.3
B_CELL_NAIVE_37
121.2
B_CELL_NAIVE_38
121.1
B_CELL_NAIVE_39
120.8
B_CELL_NAIVE_40
120.8
B_CELL_NAIVE_41
120.4
B_CELL_NAIVE_42
119.7
B_CELL_NAIVE_43
119.0
B_CELL_NAIVE_44
118.2
B_CELL_NAIVE_45
118.1
B_CELL_NAIVE_46
117.4
B_CELL_NAIVE_47
117.0
B_CELL_NAIVE_48
116.6
B_CELL_NAIVE_49
116.0
B_CELL_NAIVE_50
115.1
B_CELL_NAIVE_51
114.6
B_CELL_NAIVE_52
114.6
B_CELL_NAIVE_53
114.3
B_CELL_NAIVE_54
114.2
B_CELL_NAIVE_55
114.1
B_CELL_NAIVE_56
113.7
B_CELL_NAIVE_57
113.5
B_CELL_NAIVE_58
113.1
B_CELL_NAIVE_59
112.8
B_CELL_NAIVE_60
112.7
B_CELL_NAIVE_61
112.3
B_CELL_NAIVE_62
111.9
B_CELL_NAIVE_63
111.8
B_CELL_NAIVE_64
111.8
B_CELL_NAIVE_65
110.5
B_CELL_NAIVE_66
110.1
B_CELL_NAIVE_67
110.0
B_CELL_NAIVE_68
109.9
B_CELL_NAIVE_69
109.5
B_CELL_NAIVE_70
109.5
B_CELL_NAIVE_71
107.5
B_CELL_NAIVE_72
107.5
B_CELL_NAIVE_73
107.1
B_CELL_NAIVE_74
106.5
B_CELL_NAIVE_75
104.7
B_CELL_NAIVE_76
104.5
B_CELL_NAIVE_77
104.1
B_CELL_NAIVE_78
103.0
B_CELL_NAIVE_79
102.6
B_CELL_NAIVE_80
102.6
B_CELL_NAIVE_81
101.0
B_CELL_NAIVE_82
101.0
B_CELL_NAIVE_83
100.3
B_CELL_NAIVE_84
99.4
B_CELL_NAIVE_85
97.6
B_CELL_NAIVE_86
96.7
B_CELL_NAIVE_87
96.7
B_CELL_NAIVE_88
96.1
B_CELL_NAIVE_89
92.9
B_CELL_NAIVE_90
91.8
B_CELL_NAIVE_91
87.8
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The Human Protein Atlas project is funded
