A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
60.8
nTPM
Monaco:
113.7
nTPM
Schmiedel:
71.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
60.8
HPA sample
nTPM
Classical monocyte nTPM: 53.7
Samples: 6
Max nTPM: 61.9
Min nTPM: 45.3
P10809_1003
53.3
P10809_1020
61.8
P10809_1039
61.9
P10809_1058
51.5
P10809_1080
48.4
P10809_1107
45.3
Intermediate monocyte nTPM: 47.0
Samples: 6
Max nTPM: 63.4
Min nTPM: 37.9
P10809_1004
37.9
P10809_1023
43.7
P10809_1042
46.9
P10809_1061
63.4
P10809_1081
43.0
P10809_1108
47.0
Non-classical monocyte nTPM: 60.8
Samples: 5
Max nTPM: 104.6
Min nTPM: 39.7
P10809_1005
50.8
P10809_1053
54.6
P10809_1072
104.6
P10809_1082
39.7
P10809_1109
54.2
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
113.7
Monaco sample
nTPM
Classical monocyte nTPM: 113.7
Samples: 4
Max nTPM: 125.7
Min nTPM: 99.6
RHH5313_R3680
107.5
RHH5221_R3593
121.9
RHH5250_R3622
125.7
RHH5279_R3651
99.6
Intermediate monocyte nTPM: 89.6
Samples: 4
Max nTPM: 110.1
Min nTPM: 74.4
RHH5314_R3681
74.4
RHH5222_R3594
110.1
RHH5251_R3623
75.0
RHH5280_R3652
98.9
Non-classical monocyte nTPM: 83.7
Samples: 4
Max nTPM: 107.8
Min nTPM: 54.3
RHH5315_R3682
92.3
RHH5223_R3595
107.8
RHH5252_R3624
80.2
RHH5281_R3653
54.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
71.2
Schmiedel sample id
TPM
Classical monocyte TPM: 66.2
Samples: 91
Max TPM: 87.1
Min TPM: 47.5
MONOCYTES_1
87.1
MONOCYTES_2
81.8
MONOCYTES_3
81.8
MONOCYTES_4
81.7
MONOCYTES_5
80.0
MONOCYTES_6
79.2
MONOCYTES_7
79.1
MONOCYTES_8
78.8
MONOCYTES_9
78.6
MONOCYTES_10
76.8
MONOCYTES_11
76.0
MONOCYTES_12
75.9
MONOCYTES_13
75.3
MONOCYTES_14
75.2
MONOCYTES_15
75.1
MONOCYTES_16
75.0
MONOCYTES_17
74.4
MONOCYTES_18
74.3
MONOCYTES_19
73.0
MONOCYTES_20
72.9
MONOCYTES_21
72.3
MONOCYTES_22
72.0
MONOCYTES_23
71.8
MONOCYTES_24
71.3
MONOCYTES_25
71.3
MONOCYTES_26
71.1
MONOCYTES_27
70.9
MONOCYTES_28
70.8
MONOCYTES_29
70.8
MONOCYTES_30
70.7
MONOCYTES_31
70.5
MONOCYTES_32
70.4
MONOCYTES_33
70.2
MONOCYTES_34
69.6
MONOCYTES_35
69.0
MONOCYTES_36
69.0
MONOCYTES_37
68.5
MONOCYTES_38
68.2
MONOCYTES_39
68.2
MONOCYTES_40
67.9
MONOCYTES_41
67.0
MONOCYTES_42
66.5
MONOCYTES_43
65.1
MONOCYTES_44
64.9
MONOCYTES_45
64.7
MONOCYTES_46
64.3
MONOCYTES_47
64.2
MONOCYTES_48
63.9
MONOCYTES_49
63.8
MONOCYTES_50
63.8
MONOCYTES_51
63.8
MONOCYTES_52
63.5
MONOCYTES_53
63.3
MONOCYTES_54
63.2
MONOCYTES_55
63.1
MONOCYTES_56
63.0
MONOCYTES_57
62.9
MONOCYTES_58
62.7
MONOCYTES_59
62.3
MONOCYTES_60
62.2
MONOCYTES_61
62.2
MONOCYTES_62
62.1
MONOCYTES_63
61.9
MONOCYTES_64
61.4
MONOCYTES_65
61.3
MONOCYTES_66
61.0
MONOCYTES_67
61.0
MONOCYTES_68
60.4
MONOCYTES_69
60.3
MONOCYTES_70
60.3
MONOCYTES_71
59.9
MONOCYTES_72
59.6
MONOCYTES_73
59.4
MONOCYTES_74
59.2
MONOCYTES_75
58.1
MONOCYTES_76
57.8
MONOCYTES_77
57.8
MONOCYTES_78
57.7
MONOCYTES_79
57.6
MONOCYTES_80
56.8
MONOCYTES_81
56.5
MONOCYTES_82
56.3
MONOCYTES_83
56.3
MONOCYTES_84
55.8
MONOCYTES_85
54.5
MONOCYTES_86
53.7
MONOCYTES_87
53.3
MONOCYTES_88
52.7
MONOCYTES_89
51.5
MONOCYTES_90
51.5
MONOCYTES_91
47.5
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Non-classical monocyte TPM: 71.2
Samples: 90
Max TPM: 98.1
Min TPM: 54.2
M2_1
98.1
M2_2
89.8
M2_3
87.7
M2_4
87.1
M2_5
86.2
M2_6
85.6
M2_7
84.9
M2_8
84.6
M2_9
83.7
M2_10
82.8
M2_11
81.8
M2_12
81.2
M2_13
80.1
M2_14
80.0
M2_15
79.7
M2_16
79.4
M2_17
79.4
M2_18
79.4
M2_19
79.2
M2_20
78.9
M2_21
76.1
M2_22
76.1
M2_23
75.9
M2_24
75.9
M2_25
75.3
M2_26
74.6
M2_27
74.6
M2_28
73.7
M2_29
73.5
M2_30
73.4
M2_31
73.1
M2_32
72.2
M2_33
71.7
M2_34
71.6
M2_35
71.4
M2_36
71.3
M2_37
71.1
M2_38
71.1
M2_39
70.9
M2_40
70.9
M2_41
70.7
M2_42
70.5
M2_43
70.5
M2_44
70.3
M2_45
70.0
M2_46
70.0
M2_47
69.7
M2_48
69.2
M2_49
69.1
M2_50
69.1
M2_51
69.1
M2_52
68.9
M2_53
68.9
M2_54
68.5
M2_55
68.4
M2_56
68.3
M2_57
68.2
M2_58
68.0
M2_59
67.9
M2_60
67.8
M2_61
67.7
M2_62
67.0
M2_63
66.8
M2_64
66.8
M2_65
66.4
M2_66
66.2
M2_67
66.0
M2_68
66.0
M2_69
65.8
M2_70
65.5
M2_71
65.1
M2_72
64.6
M2_73
64.3
M2_74
64.3
M2_75
63.8
M2_76
63.8
M2_77
63.4
M2_78
63.4
M2_79
63.3
M2_80
62.6
M2_81
62.5
M2_82
62.1
M2_83
61.8
M2_84
60.8
M2_85
60.5
M2_86
60.2
M2_87
57.3
M2_88
56.3
M2_89
55.3
M2_90
54.2
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