A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2.9
nTPM
Monaco:
29.5
nTPM
Schmiedel:
59.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.9
HPA sample
nTPM
Classical monocyte nTPM: 1.1
Samples: 6
Max nTPM: 2.0
Min nTPM: 0.7
P10809_1003
0.9
P10809_1020
0.7
P10809_1039
0.7
P10809_1058
2.0
P10809_1080
0.7
P10809_1107
1.5
Intermediate monocyte nTPM: 1.5
Samples: 6
Max nTPM: 2.6
Min nTPM: 0.7
P10809_1004
0.7
P10809_1023
1.6
P10809_1042
2.6
P10809_1061
2.1
P10809_1081
1.2
P10809_1108
0.8
Non-classical monocyte nTPM: 2.9
Samples: 5
Max nTPM: 11.2
Min nTPM: 0.5
P10809_1005
1.0
P10809_1053
0.5
P10809_1072
11.2
P10809_1082
1.2
P10809_1109
0.7
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
29.5
Monaco sample
nTPM
Classical monocyte nTPM: 28.9
Samples: 4
Max nTPM: 39.4
Min nTPM: 19.7
RHH5313_R3680
34.0
RHH5221_R3593
19.7
RHH5250_R3622
22.4
RHH5279_R3651
39.4
Intermediate monocyte nTPM: 29.5
Samples: 4
Max nTPM: 43.1
Min nTPM: 16.9
RHH5314_R3681
26.5
RHH5222_R3594
16.9
RHH5251_R3623
43.1
RHH5280_R3652
31.6
Non-classical monocyte nTPM: 24.7
Samples: 4
Max nTPM: 34.9
Min nTPM: 16.7
RHH5315_R3682
16.7
RHH5223_R3595
24.7
RHH5252_R3624
34.9
RHH5281_R3653
22.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
59.0
Schmiedel sample id
TPM
Classical monocyte TPM: 55.9
Samples: 91
Max TPM: 71.3
Min TPM: 43.1
MONOCYTES_1
71.3
MONOCYTES_2
66.4
MONOCYTES_3
66.0
MONOCYTES_4
65.2
MONOCYTES_5
64.2
MONOCYTES_6
63.8
MONOCYTES_7
63.1
MONOCYTES_8
62.6
MONOCYTES_9
62.6
MONOCYTES_10
62.5
MONOCYTES_11
62.4
MONOCYTES_12
62.1
MONOCYTES_13
62.0
MONOCYTES_14
62.0
MONOCYTES_15
62.0
MONOCYTES_16
61.8
MONOCYTES_17
61.7
MONOCYTES_18
61.4
MONOCYTES_19
61.1
MONOCYTES_20
60.8
MONOCYTES_21
60.6
MONOCYTES_22
60.3
MONOCYTES_23
60.3
MONOCYTES_24
60.2
MONOCYTES_25
59.7
MONOCYTES_26
59.7
MONOCYTES_27
59.5
MONOCYTES_28
59.4
MONOCYTES_29
59.4
MONOCYTES_30
58.9
MONOCYTES_31
58.6
MONOCYTES_32
58.2
MONOCYTES_33
57.6
MONOCYTES_34
57.5
MONOCYTES_35
57.3
MONOCYTES_36
57.3
MONOCYTES_37
57.3
MONOCYTES_38
57.2
MONOCYTES_39
57.1
MONOCYTES_40
57.0
MONOCYTES_41
56.9
MONOCYTES_42
56.8
MONOCYTES_43
56.7
MONOCYTES_44
56.7
MONOCYTES_45
56.3
MONOCYTES_46
56.2
MONOCYTES_47
56.1
MONOCYTES_48
56.0
MONOCYTES_49
55.8
MONOCYTES_50
55.8
MONOCYTES_51
55.6
MONOCYTES_52
55.4
MONOCYTES_53
54.9
MONOCYTES_54
54.8
MONOCYTES_55
54.6
MONOCYTES_56
54.3
MONOCYTES_57
54.3
MONOCYTES_58
54.3
MONOCYTES_59
54.3
MONOCYTES_60
54.2
MONOCYTES_61
54.1
MONOCYTES_62
53.7
MONOCYTES_63
53.5
MONOCYTES_64
53.3
MONOCYTES_65
52.8
MONOCYTES_66
52.5
MONOCYTES_67
52.5
MONOCYTES_68
52.0
MONOCYTES_69
51.9
MONOCYTES_70
51.7
MONOCYTES_71
51.3
MONOCYTES_72
51.3
MONOCYTES_73
50.8
MONOCYTES_74
50.8
MONOCYTES_75
50.6
MONOCYTES_76
50.4
MONOCYTES_77
50.3
MONOCYTES_78
50.1
MONOCYTES_79
49.9
MONOCYTES_80
49.8
MONOCYTES_81
49.7
MONOCYTES_82
49.0
MONOCYTES_83
48.3
MONOCYTES_84
47.4
MONOCYTES_85
47.0
MONOCYTES_86
46.8
MONOCYTES_87
45.8
MONOCYTES_88
45.4
MONOCYTES_89
43.9
MONOCYTES_90
43.3
MONOCYTES_91
43.1
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Non-classical monocyte TPM: 59.0
Samples: 90
Max TPM: 71.8
Min TPM: 41.3
M2_1
71.8
M2_2
70.5
M2_3
70.4
M2_4
69.3
M2_5
69.2
M2_6
68.7
M2_7
68.1
M2_8
68.0
M2_9
67.9
M2_10
67.8
M2_11
66.7
M2_12
66.6
M2_13
66.4
M2_14
65.1
M2_15
64.9
M2_16
64.7
M2_17
64.7
M2_18
64.7
M2_19
64.3
M2_20
64.3
M2_21
64.3
M2_22
63.9
M2_23
63.8
M2_24
63.8
M2_25
63.6
M2_26
63.2
M2_27
63.1
M2_28
63.0
M2_29
62.9
M2_30
62.7
M2_31
62.3
M2_32
62.1
M2_33
61.8
M2_34
61.5
M2_35
61.5
M2_36
61.4
M2_37
61.2
M2_38
61.0
M2_39
60.8
M2_40
60.4
M2_41
60.3
M2_42
60.1
M2_43
59.8
M2_44
59.3
M2_45
58.9
M2_46
58.8
M2_47
58.7
M2_48
58.7
M2_49
58.3
M2_50
58.0
M2_51
58.0
M2_52
57.8
M2_53
57.4
M2_54
57.3
M2_55
56.9
M2_56
56.9
M2_57
56.9
M2_58
56.4
M2_59
56.2
M2_60
56.1
M2_61
56.1
M2_62
56.0
M2_63
55.6
M2_64
55.5
M2_65
55.1
M2_66
55.1
M2_67
54.8
M2_68
54.7
M2_69
54.7
M2_70
54.4
M2_71
54.3
M2_72
54.3
M2_73
53.8
M2_74
53.5
M2_75
53.5
M2_76
52.8
M2_77
52.1
M2_78
52.0
M2_79
51.8
M2_80
51.7
M2_81
50.7
M2_82
50.6
M2_83
50.5
M2_84
49.8
M2_85
49.4
M2_86
47.1
M2_87
46.7
M2_88
45.9
M2_89
45.3
M2_90
41.3
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