MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.0 nTPM
HPA Brain:43.1 nTPM
GTEx:16.0 nTPM
FANTOM5:56.1 Scaled Tags Per Million
Pig:29.5 nTPM
Mouse:55.0 nTPM
Allen mouse:12.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 43.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 37.1
1827 Male, age 72, unknown 44.7
2019 Male, age 18, unknown 42.3
2411 Female, age 72, unknown 40.2
2666 Male, age 74, left hemisphere 38.5
2586 Male, age 75, left hemisphere 38.0
2219 Male, age 76, both hemispheres 35.2
1870 Female, age 42, unknown 34.0
2828 Female, age 72, unknown 33.4
1833 Male, age 53, unknown 32.8
1830 Male, age 51, unknown 31.7
Dorsal raphe nucleus
nTPM: 36.7
2298 Female, age 72, unknown 40.8
1828 Male, age 53, unknown 38.8
2047 Male, age 72, unknown 38.4
2750 Male, age 76, both hemispheres 35.1
2016 Female, age 72, unknown 30.4
Inferior colliculus
nTPM: 39.2
2097 Female, age 72, unknown 44.4
1848 Female, age 42, unknown 39.4
1890 Male, age 53, unknown 37.4
2849 Male, age 72, unknown 35.5
Median raphe nucleus
nTPM: 37.5
2220 Male, age 76, midline 37.5
Periaquaductal grey, anterior
nTPM: 42.9
1947 Male, age 18, unknown 46.8
1795 Male, age 51, unknown 41.6
2502 Female, age 75, unknown 40.4
Periaquaductal grey, dorsal
nTPM: 36.5
1840 Male, age 53, unknown 42.1
1831 Male, age 72, unknown 36.2
2464 Female, age 72, unknown 35.3
2850 Male, age 76, both hemispheres 32.3
Periaquaductal grey, lateral
nTPM: 35.0
2272 Male, age 74, both hemispheres 38.7
2053 Male, age 18, unknown 34.1
2140 Male, age 76, both hemispheres 32.2
Pretectal area
nTPM: 43.1
1816 Male, age 51, unknown 61.4
2007 Male, age 72, unknown 53.3
1944 Female, age 72, unknown 50.6
1817 Female, age 42, unknown 48.3
1815 Male, age 53, unknown 42.8
2667 Female, age 75, unknown 40.5
2273 Male, age 74, both hemispheres 38.1
2825 Male, age 18, unknown 37.3
2407 Male, age 75, both hemispheres 36.9
2224 Female, age 72, unknown 36.4
2316 Male, age 76, right hemisphere 29.1
Red nucleus
nTPM: 35.1
2588 Male, age 74, left hemisphere 42.8
2584 Male, age 75, left hemisphere 40.3
1821 Female, age 72, unknown 40.0
2785 Male, age 18, unknown 37.7
2725 Female, age 75, unknown 36.9
2503 Female, age 72, unknown 36.5
1954 Female, age 42, unknown 35.5
2769 Male, age 72, unknown 33.3
2227 Male, age 72, unknown 32.7
1865 Male, age 51, unknown 30.4
1904 Male, age 53, unknown 28.7
2823 Male, age 76, right hemisphere 26.7
Substantia nigra
nTPM: 42.7
1941 Male, age 53, unknown 51.2
1916 Female, age 42, unknown 46.6
2583 Male, age 75, right hemisphere 46.1
2665 Male, age 74, both hemispheres 46.0
1889 Female, age 72, unknown 45.2
2241 Male, age 72, unknown 42.1
2590 Female, age 75, unknown 41.0
2409 Female, age 72, unknown 40.1
1851 Male, age 51, unknown 39.9
2699 Male, age 18, unknown 29.1
Superior colliculus
nTPM: 37.6
2261 Male, age 18, unknown 46.3
1796 Male, age 53, unknown 41.8
2087 Female, age 72, unknown 41.6
2668 Female, age 75, unknown 40.2
2587 Male, age 74, left hemisphere 38.5
1839 Male, age 51, unknown 38.0
1895 Male, age 76, right hemisphere 37.0
2664 Male, age 75, both hemispheres 35.3
1913 Female, age 42, unknown 29.0
1995 Male, age 72, unknown 28.5
Ventral tegmental area
nTPM: 37.4
2410 Female, age 72, unknown 43.4
2218 Male, age 76, both hemispheres 38.8
1915 Female, age 42, unknown 37.5
2223 Female, age 72, unknown 37.1
1942 Male, age 51, unknown 36.5
2021 Male, age 53, unknown 31.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 16.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.0
Samples: 183

Max nTPM: 50.5
Min nTPM: 4.1
Std nTPM: 6.9
Median nTPM: 14.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 50.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 45.5
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 45.1
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 33.8
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 32.5
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 32.2
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 30.9
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 30.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 29.3
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 29.2
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 29.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 56.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 56.1
FF:10158-103A5 76 years, female 56.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 29.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 23.9
Samples: 4

Max nTPM: 28.5
Min nTPM: 16.4
Sample A Female 27.9
Sample B Female 22.8
Sample C Male 28.5
Sample D Male 16.4
Midbrain
nTPM: 29.6
Samples: 4

Max nTPM: 46.9
Min nTPM: 14.1
Sample A Female 14.1
Sample B Female 24.5
Sample C Male 46.9
Sample D Male 32.7
Periaqueductal gray
nTPM: 24.3
Samples: 3

Max nTPM: 27.0
Min nTPM: 21.6
Sample B Female 24.3
Sample C Male 27.0
Sample D Male 21.6
Superior colliculi
nTPM: 29.1
Samples: 4

Max nTPM: 37.5
Min nTPM: 22.1
Sample A Female 26.5
Sample B Female 22.1
Sample C Male 37.5
Sample D Male 30.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 55.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 55.0
Samples: 4

Max nTPM: 59.9
Min nTPM: 42.1
Sample A Male 42.1
Sample B Male 59.9
Sample C Female 59.4
Sample D Female 58.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 12.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.5
71234742 Antisense, RP_050505_04_D04, Mouse strain C57BL/6J (56 days, male) 12.5

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