MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:89.2 nTPM
HPA Brain:228.3 nTPM
GTEx:89.2 nTPM
FANTOM5:1440.7 Scaled Tags Per Million
Pig:224.5 nTPM
Mouse:108.8 nTPM
Allen mouse:0.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 228.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 175.6
1870 Female, age 42, unknown 227.2
1830 Male, age 51, unknown 219.7
1833 Male, age 53, unknown 218.6
2411 Female, age 72, unknown 208.2
2019 Male, age 18, unknown 202.1
2828 Female, age 72, unknown 168.3
2666 Male, age 74, left hemisphere 146.3
1827 Male, age 72, unknown 142.5
2219 Male, age 76, both hemispheres 123.5
2586 Male, age 75, left hemisphere 100.0
Dorsal raphe nucleus
nTPM: 155.7
2750 Male, age 76, both hemispheres 228.5
2016 Female, age 72, unknown 171.5
1828 Male, age 53, unknown 142.9
2298 Female, age 72, unknown 126.6
2047 Male, age 72, unknown 109.1
Inferior colliculus
nTPM: 134.8
2097 Female, age 72, unknown 144.5
1848 Female, age 42, unknown 144.0
1890 Male, age 53, unknown 126.9
2849 Male, age 72, unknown 123.7
Median raphe nucleus
nTPM: 131.8
2220 Male, age 76, midline 131.8
Periaquaductal grey, anterior
nTPM: 137.0
2502 Female, age 75, unknown 157.8
1947 Male, age 18, unknown 145.6
1795 Male, age 51, unknown 107.6
Periaquaductal grey, dorsal
nTPM: 123.5
2464 Female, age 72, unknown 160.6
1831 Male, age 72, unknown 125.3
2850 Male, age 76, both hemispheres 118.2
1840 Male, age 53, unknown 89.9
Periaquaductal grey, lateral
nTPM: 130.3
2272 Male, age 74, both hemispheres 144.2
2053 Male, age 18, unknown 131.1
2140 Male, age 76, both hemispheres 115.6
Pretectal area
nTPM: 156.3
1815 Male, age 53, unknown 196.1
2316 Male, age 76, right hemisphere 192.7
2667 Female, age 75, unknown 183.9
2273 Male, age 74, both hemispheres 170.8
1817 Female, age 42, unknown 164.8
2007 Male, age 72, unknown 148.7
2224 Female, age 72, unknown 139.8
2407 Male, age 75, both hemispheres 138.0
2825 Male, age 18, unknown 136.9
1944 Female, age 72, unknown 130.3
1816 Male, age 51, unknown 117.5
Red nucleus
nTPM: 228.3
1821 Female, age 72, unknown 290.7
1904 Male, age 53, unknown 279.9
2823 Male, age 76, right hemisphere 262.3
1865 Male, age 51, unknown 260.1
1954 Female, age 42, unknown 254.8
2503 Female, age 72, unknown 241.6
2227 Male, age 72, unknown 229.9
2785 Male, age 18, unknown 227.3
2769 Male, age 72, unknown 225.7
2725 Female, age 75, unknown 190.6
2588 Male, age 74, left hemisphere 150.9
2584 Male, age 75, left hemisphere 125.3
Substantia nigra
nTPM: 159.5
2409 Female, age 72, unknown 211.4
2241 Male, age 72, unknown 187.3
1851 Male, age 51, unknown 183.2
1889 Female, age 72, unknown 174.8
2699 Male, age 18, unknown 166.2
1916 Female, age 42, unknown 155.6
2583 Male, age 75, right hemisphere 142.7
2590 Female, age 75, unknown 142.7
1941 Male, age 53, unknown 142.6
2665 Male, age 74, both hemispheres 88.5
Superior colliculus
nTPM: 166.6
1913 Female, age 42, unknown 236.9
1995 Male, age 72, unknown 229.2
1895 Male, age 76, right hemisphere 192.1
2587 Male, age 74, left hemisphere 178.6
1839 Male, age 51, unknown 166.0
2668 Female, age 75, unknown 148.1
1796 Male, age 53, unknown 141.2
2087 Female, age 72, unknown 137.2
2261 Male, age 18, unknown 129.2
2664 Male, age 75, both hemispheres 107.1
Ventral tegmental area
nTPM: 162.1
2410 Female, age 72, unknown 204.3
2223 Female, age 72, unknown 172.1
1915 Female, age 42, unknown 158.3
2021 Male, age 53, unknown 146.5
2218 Male, age 76, both hemispheres 146.3
1942 Male, age 51, unknown 145.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 89.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 89.2
Samples: 183

Max nTPM: 261.2
Min nTPM: 26.1
Std nTPM: 42.5
Median nTPM: 77.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 261.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 249.4
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 245.5
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 234.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 230.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 214.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 190.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 176.3
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 169.8
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 167.9
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 165.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 1440.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1440.7
FF:10158-103A5 76 years, female 1440.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 224.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 208.3
Samples: 4

Max nTPM: 258.8
Min nTPM: 174.4
Sample A Female 222.7
Sample B Female 177.4
Sample C Male 174.4
Sample D Male 258.8
Midbrain
nTPM: 224.6
Samples: 4

Max nTPM: 390.6
Min nTPM: 133.7
Sample A Female 390.6
Sample B Female 227.1
Sample C Male 146.8
Sample D Male 133.7
Periaqueductal gray
nTPM: 169.7
Samples: 3

Max nTPM: 195.6
Min nTPM: 154.3
Sample B Female 195.6
Sample C Male 154.3
Sample D Male 159.2
Superior colliculi
nTPM: 182.4
Samples: 4

Max nTPM: 206.3
Min nTPM: 164.2
Sample A Female 206.3
Sample B Female 164.2
Sample C Male 182.0
Sample D Male 176.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 108.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 108.8
Samples: 4

Max nTPM: 110.0
Min nTPM: 107.3
Sample A Male 108.8
Sample B Male 110.0
Sample C Female 109.1
Sample D Female 107.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
69736028 Antisense, RP_050503_04_A08, Mouse strain C57BL/6J (56 days, male) 0.0

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