A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.1
nTPM
Monaco:
15.6
nTPM
Schmiedel:
185.2
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.1
HPA sample
nTPM
Memory B-cell nTPM: 0.5
Samples: 6
Max nTPM: 0.8
Min nTPM: 0.0
P10809_1017
0.7
P10809_1025
0.8
P10809_1044
0.0
P10809_1063
0.3
P10809_1092
0.4
P10809_1105
0.6
Naive B-cell nTPM: 1.2
Samples: 6
Max nTPM: 2.8
Min nTPM: 0.6
P10809_1011
0.6
P10809_1029
0.6
P10809_1048
2.8
P10809_1067
1.1
P10809_1091
0.8
P10809_1104
1.0
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
15.6
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 15.2
Samples: 4
Max nTPM: 24.0
Min nTPM: 8.3
RHH5310_R3677
8.3
RHH5218_R3590
18.9
RHH5247_R3619
9.6
RHH5276_R3648
24.0
Naive B-cell nTPM: 15.6
Samples: 4
Max nTPM: 21.2
Min nTPM: 7.2
RHH5308_R3675
14.0
RHH5216_R3588
7.2
RHH5245_R3617
21.2
RHH5274_R3646
19.9
Non-switched memory B-cell nTPM: 13.1
Samples: 4
Max nTPM: 20.2
Min nTPM: 9.3
RHH5309_R3676
9.8
RHH5217_R3589
9.3
RHH5246_R3618
12.9
RHH5275_R3647
20.2
Plasmablast nTPM: 6.4
Samples: 4
Max nTPM: 11.1
Min nTPM: 3.5
RHH5312_R3679
3.5
RHH5220_R3592
5.9
RHH5249_R3621
11.1
RHH5278_R3650
5.0
Switched memory B-cell nTPM: 11.7
Samples: 4
Max nTPM: 18.0
Min nTPM: 7.5
RHH5311_R3678
7.5
RHH5219_R3591
11.1
RHH5248_R3620
10.0
RHH5277_R3649
18.0
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
185.2
Schmiedel sample id
TPM
Naive B-cell TPM: 185.2
Samples: 91
Max TPM: 333.7
Min TPM: 124.8
B_CELL_NAIVE_1
333.7
B_CELL_NAIVE_2
288.2
B_CELL_NAIVE_3
267.5
B_CELL_NAIVE_4
258.2
B_CELL_NAIVE_5
250.4
B_CELL_NAIVE_6
247.3
B_CELL_NAIVE_7
235.0
B_CELL_NAIVE_8
221.8
B_CELL_NAIVE_9
219.0
B_CELL_NAIVE_10
218.7
B_CELL_NAIVE_11
217.2
B_CELL_NAIVE_12
216.7
B_CELL_NAIVE_13
215.8
B_CELL_NAIVE_14
212.6
B_CELL_NAIVE_15
212.3
B_CELL_NAIVE_16
209.9
B_CELL_NAIVE_17
209.4
B_CELL_NAIVE_18
208.8
B_CELL_NAIVE_19
207.2
B_CELL_NAIVE_20
202.9
B_CELL_NAIVE_21
201.4
B_CELL_NAIVE_22
200.7
B_CELL_NAIVE_23
199.8
B_CELL_NAIVE_24
199.6
B_CELL_NAIVE_25
198.7
B_CELL_NAIVE_26
197.8
B_CELL_NAIVE_27
197.1
B_CELL_NAIVE_28
196.8
B_CELL_NAIVE_29
195.9
B_CELL_NAIVE_30
195.1
B_CELL_NAIVE_31
193.6
B_CELL_NAIVE_32
192.0
B_CELL_NAIVE_33
191.8
B_CELL_NAIVE_34
191.1
B_CELL_NAIVE_35
190.9
B_CELL_NAIVE_36
190.5
B_CELL_NAIVE_37
187.7
B_CELL_NAIVE_38
186.3
B_CELL_NAIVE_39
185.8
B_CELL_NAIVE_40
185.5
B_CELL_NAIVE_41
185.2
B_CELL_NAIVE_42
185.1
B_CELL_NAIVE_43
185.0
B_CELL_NAIVE_44
183.9
B_CELL_NAIVE_45
183.8
B_CELL_NAIVE_46
183.5
B_CELL_NAIVE_47
183.2
B_CELL_NAIVE_48
182.7
B_CELL_NAIVE_49
182.7
B_CELL_NAIVE_50
182.4
B_CELL_NAIVE_51
181.6
B_CELL_NAIVE_52
181.4
B_CELL_NAIVE_53
180.2
B_CELL_NAIVE_54
180.0
B_CELL_NAIVE_55
175.1
B_CELL_NAIVE_56
174.1
B_CELL_NAIVE_57
173.5
B_CELL_NAIVE_58
171.7
B_CELL_NAIVE_59
171.6
B_CELL_NAIVE_60
171.2
B_CELL_NAIVE_61
170.8
B_CELL_NAIVE_62
168.1
B_CELL_NAIVE_63
167.8
B_CELL_NAIVE_64
166.7
B_CELL_NAIVE_65
164.1
B_CELL_NAIVE_66
163.2
B_CELL_NAIVE_67
162.1
B_CELL_NAIVE_68
161.2
B_CELL_NAIVE_69
159.3
B_CELL_NAIVE_70
158.0
B_CELL_NAIVE_71
157.8
B_CELL_NAIVE_72
157.6
B_CELL_NAIVE_73
157.2
B_CELL_NAIVE_74
156.8
B_CELL_NAIVE_75
156.3
B_CELL_NAIVE_76
153.9
B_CELL_NAIVE_77
152.7
B_CELL_NAIVE_78
150.9
B_CELL_NAIVE_79
150.5
B_CELL_NAIVE_80
150.4
B_CELL_NAIVE_81
148.4
B_CELL_NAIVE_82
147.0
B_CELL_NAIVE_83
146.9
B_CELL_NAIVE_84
143.7
B_CELL_NAIVE_85
140.9
B_CELL_NAIVE_86
140.6
B_CELL_NAIVE_87
139.0
B_CELL_NAIVE_88
137.8
B_CELL_NAIVE_89
133.8
B_CELL_NAIVE_90
133.8
B_CELL_NAIVE_91
124.8
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