A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.8
nTPM
Monaco:
26.4
nTPM
Schmiedel:
122.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.8
HPA sample
nTPM
Classical monocyte nTPM: 0.8
Samples: 6
Max nTPM: 1.1
Min nTPM: 0.6
P10809_1003
0.7
P10809_1020
0.9
P10809_1039
0.8
P10809_1058
1.1
P10809_1080
0.6
P10809_1107
0.9
Intermediate monocyte nTPM: 0.4
Samples: 6
Max nTPM: 1.3
Min nTPM: 0.0
P10809_1004
0.5
P10809_1023
0.0
P10809_1042
0.0
P10809_1061
1.3
P10809_1081
0.4
P10809_1108
0.3
Non-classical monocyte nTPM: 0.2
Samples: 5
Max nTPM: 0.3
Min nTPM: 0.0
P10809_1005
0.3
P10809_1053
0.0
P10809_1072
0.0
P10809_1082
0.3
P10809_1109
0.3
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
26.4
Monaco sample
nTPM
Classical monocyte nTPM: 26.4
Samples: 4
Max nTPM: 34.4
Min nTPM: 21.2
RHH5313_R3680
21.2
RHH5221_R3593
34.4
RHH5250_R3622
25.2
RHH5279_R3651
24.6
Intermediate monocyte nTPM: 10.6
Samples: 4
Max nTPM: 13.0
Min nTPM: 6.7
RHH5314_R3681
13.0
RHH5222_R3594
11.0
RHH5251_R3623
11.6
RHH5280_R3652
6.7
Non-classical monocyte nTPM: 5.7
Samples: 4
Max nTPM: 8.0
Min nTPM: 4.0
RHH5315_R3682
6.2
RHH5223_R3595
4.4
RHH5252_R3624
8.0
RHH5281_R3653
4.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
122.1
Schmiedel sample id
TPM
Classical monocyte TPM: 122.1
Samples: 91
Max TPM: 164.6
Min TPM: 90.2
MONOCYTES_1
164.6
MONOCYTES_2
158.0
MONOCYTES_3
150.7
MONOCYTES_4
150.2
MONOCYTES_5
149.6
MONOCYTES_6
147.4
MONOCYTES_7
145.0
MONOCYTES_8
144.4
MONOCYTES_9
142.8
MONOCYTES_10
141.2
MONOCYTES_11
141.1
MONOCYTES_12
140.3
MONOCYTES_13
139.8
MONOCYTES_14
138.5
MONOCYTES_15
137.3
MONOCYTES_16
137.1
MONOCYTES_17
135.5
MONOCYTES_18
135.2
MONOCYTES_19
135.1
MONOCYTES_20
134.1
MONOCYTES_21
134.0
MONOCYTES_22
133.9
MONOCYTES_23
133.8
MONOCYTES_24
133.8
MONOCYTES_25
133.6
MONOCYTES_26
132.5
MONOCYTES_27
132.5
MONOCYTES_28
132.2
MONOCYTES_29
129.2
MONOCYTES_30
129.1
MONOCYTES_31
129.0
MONOCYTES_32
128.8
MONOCYTES_33
128.6
MONOCYTES_34
126.9
MONOCYTES_35
126.2
MONOCYTES_36
126.1
MONOCYTES_37
125.8
MONOCYTES_38
125.4
MONOCYTES_39
123.7
MONOCYTES_40
123.6
MONOCYTES_41
123.5
MONOCYTES_42
122.1
MONOCYTES_43
121.8
MONOCYTES_44
120.6
MONOCYTES_45
120.1
MONOCYTES_46
120.1
MONOCYTES_47
118.9
MONOCYTES_48
118.9
MONOCYTES_49
118.6
MONOCYTES_50
118.2
MONOCYTES_51
116.9
MONOCYTES_52
116.8
MONOCYTES_53
115.9
MONOCYTES_54
115.6
MONOCYTES_55
115.3
MONOCYTES_56
115.0
MONOCYTES_57
115.0
MONOCYTES_58
115.0
MONOCYTES_59
114.8
MONOCYTES_60
114.7
MONOCYTES_61
113.5
MONOCYTES_62
113.3
MONOCYTES_63
113.2
MONOCYTES_64
112.9
MONOCYTES_65
112.7
MONOCYTES_66
112.7
MONOCYTES_67
111.6
MONOCYTES_68
111.0
MONOCYTES_69
110.8
MONOCYTES_70
110.8
MONOCYTES_71
110.2
MONOCYTES_72
109.4
MONOCYTES_73
109.2
MONOCYTES_74
108.9
MONOCYTES_75
108.0
MONOCYTES_76
107.5
MONOCYTES_77
107.0
MONOCYTES_78
105.0
MONOCYTES_79
105.0
MONOCYTES_80
104.8
MONOCYTES_81
104.6
MONOCYTES_82
103.7
MONOCYTES_83
103.7
MONOCYTES_84
101.9
MONOCYTES_85
101.4
MONOCYTES_86
100.8
MONOCYTES_87
100.2
MONOCYTES_88
99.7
MONOCYTES_89
99.1
MONOCYTES_90
95.1
MONOCYTES_91
90.2
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Non-classical monocyte TPM: 38.0
Samples: 90
Max TPM: 55.9
Min TPM: 23.7
M2_1
55.9
M2_2
55.6
M2_3
53.2
M2_4
51.9
M2_5
51.8
M2_6
51.6
M2_7
50.0
M2_8
49.4
M2_9
48.0
M2_10
47.6
M2_11
47.1
M2_12
46.8
M2_13
46.8
M2_14
46.4
M2_15
46.3
M2_16
46.0
M2_17
45.8
M2_18
44.8
M2_19
44.3
M2_20
44.3
M2_21
43.8
M2_22
43.6
M2_23
43.3
M2_24
42.9
M2_25
42.9
M2_26
42.0
M2_27
42.0
M2_28
41.8
M2_29
41.2
M2_30
41.0
M2_31
41.0
M2_32
40.7
M2_33
40.7
M2_34
40.6
M2_35
40.5
M2_36
40.3
M2_37
40.1
M2_38
39.8
M2_39
39.6
M2_40
39.6
M2_41
38.2
M2_42
38.2
M2_43
37.7
M2_44
37.4
M2_45
37.4
M2_46
37.3
M2_47
37.1
M2_48
37.0
M2_49
36.2
M2_50
36.0
M2_51
36.0
M2_52
35.8
M2_53
35.4
M2_54
34.9
M2_55
34.8
M2_56
34.6
M2_57
34.5
M2_58
34.5
M2_59
34.1
M2_60
33.9
M2_61
33.9
M2_62
33.8
M2_63
33.7
M2_64
33.6
M2_65
33.6
M2_66
33.1
M2_67
32.9
M2_68
32.8
M2_69
32.5
M2_70
32.4
M2_71
31.7
M2_72
31.6
M2_73
31.4
M2_74
31.1
M2_75
30.9
M2_76
30.1
M2_77
29.8
M2_78
28.3
M2_79
28.1
M2_80
28.1
M2_81
27.8
M2_82
27.4
M2_83
27.2
M2_84
27.1
M2_85
27.0
M2_86
26.8
M2_87
26.5
M2_88
25.3
M2_89
24.3
M2_90
23.7
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